Hg_chrom1_TN10mRNA_2137
Organism: Heterodera glycines Gene Locus: chr1:17881758-17884075 Feature type: polypeptideProtein Sequence
Length: 181
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.413 | 0.514 | 1.406 | 0.572 | 1.197 | 0.567 | 0.921 | 0.276 | 0.859 | 1.045 | 0.335 | 2.275 | 1.228 | 0.744 | 1.804 | 0.71 | 1.177 | 1.256 | 1.275 | 0.487 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2054
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
6-26
|
0.990
|
22-93
|
0.931
|
— | — |
0.000
|
— | — |
0.048
|
0.905
|
0.064
|
0.161
|
0.022
|
0.065
|
0.129
|
0.010
|
0.084
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003140
|
2.000
|
1.000
|
Hsc_gene_25432.t1
|
— | — |
Q5SL79.1 Acyl carrier protein [Thermus thermophilus HB8]
|
KAI3411776.1 5'-AMP-activated protein kinase catalytic subunit alpha-2 [Globodera pallida]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006633
|
GO:0005575_0.838|GO:0110165_0.838|GO:0008150_0.786|GO:0005622_0.756|GO:0005737_0.756|GO:0009987_0.708|GO:0016020_0.691|GO:0008152_0.674|GO:0044238_0.641|GO:0044237_0.637|GO:0009058_0.623|GO:0003674_0.617|GO:0043226_0.611|GO:0043229_0.594|GO:0043227_0.569|GO:0043231_0.559|GO:0044281_0.559|GO:0044249_0.529|GO:0005488_0.518
|
IPR003231+64-175_96-173+|IPR009081+95-173_117-169+|IPR036736+88-180_92-172+
|
— |
PF00550+117-169+Phosphopantetheine_attachment_site
|
— |
PTHR20863+64-175+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-181
|
1x3o_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.698
|
19882.560
|
4.555
|
-6.500
|
26.519
|
8.287
|
43.094
|
56.906
|
11.602
|
14.917
|
55.801
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
grey
|
1192.500
|
495.246
|
1179.841
|
1511.461
|
2047.711
|
1692.025
|
1754.458
|
1080.112
|
620.436
|
1091.541
|
889.639
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.023
|
1.473
|
0.466
|
0.406
|
-0.260
|
— |
-0.758
|
0.846
|
— | — | — | — | — |
No JSON data available for plots.