Hg_chrom1_TN10mRNA_2139
Organism: Heterodera glycines Gene Locus: chr1:17891712-17896841 Feature type: polypeptideProtein Sequence
Length: 864
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.252 | 1.534 | 0.779 | 0.718 | 0.405 | 1.187 | 1.047 | 1.447 | 0.617 | 1.095 | 0.228 | 1.089 | 0.707 | 1.291 | 1.323 | 1.687 | 0.987 | 0.947 | 0.445 | 0.851 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2056
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.979
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— | — |
62-82
|
0.994
|
— | — | — | — |
0.000
|
— | — |
0.137
|
0.151
|
0.013
|
0.309
|
0.295
|
0.264
|
0.265
|
0.026
|
0.686
|
0.076
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003141
|
1.000
|
2.000
|
Hsc_gene_25430.t1;Hsc_gene_26544.t1
|
Hsc_gene_20373.t1;Hsc_gene_20404.t1;Hsc_gene_7037.t1
|
— | — |
KAI1727598.1 na,K-Atpase interacting protein [Ditylenchus destructor]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR008516+7-179_13-343+
|
— |
PF05640+7-179+Na,K-Atpase_Interacting_protein
|
— |
PTHR13084+13-343+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
261-864
|
1.000
|
1-260
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.969
|
91370.710
|
8.552
|
23.500
|
17.593
|
8.912
|
46.644
|
53.356
|
10.880
|
6.713
|
63.310
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
160.732
|
120.869
|
31.587
|
36.487
|
82.978
|
248.785
|
165.341
|
67.391
|
1.382
|
419.626
|
240.378
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.170
|
-1.865
|
— |
1.152
|
1.601
|
-0.580
|
-2.006
|
1.444
|
-8.459
|
5.053
|
— | — | — |
No JSON data available for plots.