Hg_chrom1_TN10mRNA_2142
Organism: Heterodera glycines Gene Locus: chr1:17907417-17917407 Feature type: polypeptideProtein Sequence
Length: 395
(Signal peptide: 1-23)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.765 | 1.001 | 0.783 | 0.698 | 0.802 | 1.753 | 0.814 | 1.266 | 1.238 | 1.095 | 0.69 | 1.34 | 0.844 | 1.168 | 1.55 | 0.976 | 1.287 | 0.69 | 1.947 | 0.819 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2059
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
KRDQQQLKPNRERNSRRKT
|
— | — | — | — |
1-23
|
0.713
|
0.597
|
0.000
|
0.000
|
0.127
|
0.167
|
0.019
|
0.299
|
0.226
|
0.106
|
0.096
|
0.034
|
0.253
|
0.728
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001096
|
1.000
|
4.000
|
Hsc_gene_26547.t1;Hsc_gene_26547.t2;Hsc_gene_525.t1;Hsc_gene_525.t2
|
Hsc_gene_13193.t1;Hsc_gene_525.t1;Hsc_gene_525.t2
|
— |
Q18932.3 Putative carbonic anhydrase-like protein 2 [Caenorhabditis elegans]
|
KAF7636349.1 Alpha-carbonic anhydrase domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004089|GO:0008270
|
GO:0005575_0.785|GO:0110165_0.776|GO:0003674_0.751|GO:0008150_0.662|GO:0005622_0.588|GO:0016020_0.559|GO:0003824_0.552
|
IPR001148+21-319_23-319_32-318+|IPR023561+34-313+|IPR036398+21-333_30-317+
|
SM01057+23-319+
|
PF00194+32-318+Eukaryotic-type_carbonic_anhydrase
|
— |
PTHR18952+34-313+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
281-395
|
1.000
|
1-280
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.887
|
44719.830
|
9.582
|
17.000
|
23.797
|
10.886
|
49.620
|
50.380
|
14.684
|
9.114
|
49.367
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
turquoise
|
789.977
|
283.941
|
1453.070
|
561.147
|
125.656
|
130.157
|
47.982
|
574.948
|
38.628
|
2235.840
|
1294.178
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.126
|
0.845
|
-1.264
|
-2.191
|
— |
-1.430
|
2.042
|
-3.441
|
-5.972
|
4.068
|
-3.602
|
— | — |