Hg_chrom1_TN10mRNA_2151
Organism: Heterodera glycines Gene Locus: chr1:17999910-18006524 Feature type: polypeptideProtein Sequence
Length: 681
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.042 | 0.854 | 0.748 | 0.861 | 0.783 | 1.468 | 0.944 | 1.689 | 1.077 | 1.528 | 0.289 | 1.728 | 1.305 | 1.299 | 1.049 | 0.986 | 0.891 | 1.068 | 0.791 | 0.302 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2068
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
RHRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.151
|
0.119
|
0.029
|
0.170
|
0.712
|
0.294
|
0.426
|
0.003
|
0.528
|
0.019
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006487
|
1.000
|
1.000
|
Hsc_gene_23817.t1
|
Hsc_gene_20781.t1;Hsc_gene_20781.t2;Hsc_gene_23817.t1
|
— |
Q8T5G8.1 Chitin synthase [Meloidogyne artiellia]
|
KAI3411785.1 Chitin synthase 2 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004100|GO:0016758
|
GO:0008150_0.970|GO:0032502_0.790|GO:0048856_0.790|GO:0032501_0.748|GO:0007275_0.662|GO:0009987_0.595|GO:0003674_0.564|GO:0065007_0.546|GO:0050789_0.538
|
IPR004835+154-629+
|
— | — | — |
PTHR22914+154-629+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-125;373-458;652-681
|
2.000
|
126-372;459-651
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.685
|
73964.980
|
6.460
|
-0.500
|
19.236
|
10.132
|
40.969
|
59.031
|
10.426
|
8.811
|
53.304
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
lightyellow
|
105.607
|
22.219
|
16.860
|
16.969
|
23.002
|
29.986
|
73.236
|
17.051
|
6.859
|
382.142
|
221.306
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.629
|
— | — | — | — |
1.299
|
-0.925
|
2.248
|
-5.870
|
— |
-3.564
|
— | — |
No JSON data available for plots.