Hg_chrom1_TN10mRNA_2156
Organism: Heterodera glycines Gene Locus: chr1:18026502-18029277 Feature type: polypeptideProtein Sequence
Length: 257
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.543 | 0.724 | 0.637 | 0.403 | 0.908 | 1.297 | 0.463 | 1.362 | 1.297 | 1.104 | 0.884 | 2.06 | 2.594 | 0.898 | 1.588 | 1.112 | 1.276 | 1.002 | 0.599 | 0.687 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2073
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
RQLKRKI,HRRRKEKRRR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.422
|
0.120
|
0.005
|
0.303
|
0.335
|
0.330
|
0.339
|
0.022
|
0.237
|
0.087
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003143
|
2.000
|
1.000
|
Hsc_gene_26177.t1
|
Hsc_gene_26177.t1
|
— |
Q3ZCD7.1 Very-long-chain enoyl-CoA reductase [Bos taurus]
|
KAI1719965.1 3-oxo-5-alpha-steroid 4-dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.946|GO:0005575_0.911|GO:0110165_0.911|GO:0009987_0.897|GO:0003674_0.846|GO:0016020_0.631|GO:0005622_0.571|GO:0071944_0.567|GO:0043226_0.553|GO:0005886_0.541|GO:0043227_0.540|GO:0043229_0.537|GO:0043231_0.526|GO:0005737_0.517
|
IPR000626+1-69+|IPR029071+18-69+|IPR049127+4-80+
|
— |
PF21696+4-80+TECR,_ubiquitin-like_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-257
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
29931.700
|
10.363
|
15.500
|
25.292
|
15.175
|
49.027
|
50.973
|
16.342
|
8.949
|
43.191
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
red
|
655.314
|
123.998
|
316.414
|
641.660
|
1818.009
|
526.202
|
559.042
|
226.114
|
20.982
|
1271.975
|
735.835
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.123
|
2.234
|
1.128
|
1.471
|
-1.774
|
— |
-1.325
|
1.448
|
— |
5.142
|
— | — | — |
No JSON data available for plots.