Hg_chrom1_TN10mRNA_2161
Organism: Heterodera glycines Gene Locus: chr1:18079067-18089797 Feature type: polypeptideProtein Sequence
Length: 1,258
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.749 | 1.386 | 1.229 | 1.179 | 1.126 | 0.978 | 0.681 | 0.954 | 1.254 | 1.01 | 1.493 | 1.356 | 1.126 | 1.07 | 0.908 | 0.863 | 0.756 | 0.759 | 0.795 | 0.935 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2078
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RKKR,RKDKRAR,KKSSTKNRRKR
|
— | — | — | — |
1-19
|
0.973
|
0.715
|
0.000
|
0.000
|
0.307
|
0.232
|
0.034
|
0.178
|
0.134
|
0.048
|
0.096
|
0.033
|
0.197
|
0.788
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000521
|
4.000
|
3.000
|
Hsc_gene_23855.t1;Hsc_gene_23866.t1;Hsc_gene_23866.t2
|
— | — |
D5FM38.1 Zinc metalloproteinase nas-36 [Brugia malayi]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
-0.230
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.963|GO:0032501_0.743|GO:0032502_0.591|GO:0048856_0.591|GO:0007275_0.553|GO:0005575_0.527|GO:0110165_0.518
|
IPR000742+1076-1087+|IPR001506+853-1052_891-1052_945-963_964-981_1001-1016_1038-1051+|IPR006026+861-1006+|IPR024079+809-1054+
|
SM00235+861-1006+
|
PF01400+891-1052+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+817-1134+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-185
|
1.000
|
186-1258
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.774
|
142170.250
|
7.959
|
22.000
|
29.730
|
10.175
|
50.159
|
49.841
|
16.216
|
13.514
|
49.523
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — | — | — | — | — | — |