Hg_chrom1_TN10mRNA_2164
Organism: Heterodera glycines Gene Locus: chr1:18110300-18112525 Feature type: polypeptideProtein Sequence
Length: 360
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.807 | 2.39 | 0.606 | 0.383 | 1.019 | 1.14 | 1.091 | 0.833 | 1.667 | 1.201 | 0.884 | 1.797 | 1.157 | 0.588 | 0.85 | 1.151 | 0.82 | 0.589 | 0.427 | 0.817 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2081
|
— | — |
1.333
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.984
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
chloroplast
|
— | — | — |
23-54
|
0.991
|
1-24
|
0.970
|
1.000
|
0.000
|
0.000
|
0.408
|
0.072
|
0.017
|
0.610
|
0.344
|
0.146
|
0.077
|
0.080
|
0.149
|
0.339
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000285
|
9.000
|
0.000
|
0.000
|
— | — |
P18160.3 Dual specificity protein kinase splA [Dictyostelium discoideum]
|
AFD54150.1 ran-binding protein 6 [Heterodera glycines]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.745|GO:0005575_0.691|GO:0110165_0.689|GO:0005622_0.610|GO:0009987_0.547|GO:0005737_0.542
|
IPR001870+156-353+|IPR003877+226-352_235-350+|IPR013320+173-353+|IPR043136+154-360+|IPR044736+238-349+|IPR050618+140-350+
|
SM00449+226-352+
|
PF00622+235-350+SPRY_domain
|
— |
PTHR12864+140-350+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-360
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.919
|
39573.760
|
8.124
|
5.000
|
21.111
|
9.167
|
48.889
|
51.111
|
11.667
|
9.444
|
50.833
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
red
|
982.523
|
77.248
|
444.475
|
2601.852
|
3098.537
|
2350.905
|
517.832
|
399.058
|
66.743
|
689.764
|
422.755
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.297
|
4.939
|
2.658
|
0.220
|
-0.383
|
-2.174
|
-2.667
|
0.518
|
— | — | — | — |
-7.385
|