Hg_chrom1_TN10mRNA_2165
Organism: Heterodera glycines Gene Locus: chr1:18114298-18126815 Feature type: polypeptideProtein Sequence
Length: 1,309
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.764 | 1.315 | 1.195 | 1.317 | 1.286 | 0.94 | 0.737 | 1.337 | 1.256 | 0.867 | 1.331 | 1.528 | 1.019 | 0.999 | 0.889 | 0.764 | 0.877 | 0.833 | 0.823 | 0.944 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2082
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-Not_Clustered
|
0.917
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RKKR
|
— | — | — | — |
1-19
|
0.965
|
0.995
|
0.000
|
0.000
|
0.210
|
0.149
|
0.059
|
0.195
|
0.150
|
0.066
|
0.141
|
0.006
|
0.264
|
0.846
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000521
|
4.000
|
3.000
|
Hsc_gene_23855.t1;Hsc_gene_23866.t1;Hsc_gene_23866.t2
|
— | — |
P98061.4 Zinc metalloproteinase nas-28 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.886|GO:0032501_0.636|GO:0005575_0.577|GO:0110165_0.574|GO:0032502_0.517|GO:0048856_0.514
|
IPR000742+1036-1047+|IPR001506+815-1012_846-1012_851-869_904-922_960-975_998-1011+|IPR006026+821-965+|IPR024079+767-1014+
|
SM00235+821-965+
|
PF01400+846-1012+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+773-1110+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-162;1309-1309
|
1.000
|
163-1308
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.626
|
147662.720
|
6.610
|
2.500
|
30.099
|
10.619
|
50.115
|
49.885
|
15.814
|
14.286
|
50.191
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
208.938
|
2.709
|
7.912
|
33.671
|
42.425
|
169.027
|
110.391
|
474.508
|
55.959
|
556.893
|
342.207
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.322
|
3.508
|
2.201
|
— |
2.006
|
-0.606
|
1.395
|
-1.966
|
— | — | — | — | — |