Hg_chrom1_TN10mRNA_2166
Organism: Heterodera glycines Gene Locus: chr1:18130068-18131969 Feature type: polypeptideProtein Sequence
Length: 218
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.907 | 1.387 | 1.251 | 0.475 | 1.835 | 1.294 | 0.382 | 1.376 | 1.325 | 1.674 | 1.043 | 1.619 | 0.51 | 1.323 | 1.03 | 0.59 | 0.677 | 0.695 | 0.353 | 0.27 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2083
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
0.961
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRKL,KRLNRLLAAENKKMKV
|
— | — | — | — | — | — |
0.000
|
— | — |
0.912
|
0.127
|
0.009
|
0.506
|
0.059
|
0.034
|
0.032
|
0.009
|
0.038
|
0.122
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006489
|
1.000
|
1.000
|
Hsc_gene_12091.t1
|
— | — | — |
KAH7729162.1 N terminus of Rad21 / Rec8 like protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.941|GO:0009987_0.875|GO:0005575_0.774|GO:0071840_0.767|GO:0110165_0.764|GO:0016043_0.763|GO:0005622_0.744|GO:0006996_0.724|GO:0065007_0.692|GO:0007049_0.691|GO:0022402_0.691|GO:0051276_0.681|GO:0050789_0.676|GO:0016020_0.674|GO:0050794_0.661|GO:0043226_0.658|GO:0043229_0.652|GO:0043227_0.610|GO:0043231_0.586|GO:0032991_0.556|GO:0005634_0.534|GO:0043228_0.532|GO:0043232_0.532|GO:0048285_0.521|GO:0000280_0.519
|
IPR049589+24-105+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
185-218
|
1.000
|
1-184
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.776
|
24673.070
|
4.689
|
-10.000
|
32.569
|
5.963
|
51.835
|
48.165
|
14.679
|
17.890
|
44.954
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
39.365
|
35.620
|
22.791
|
56.169
|
156.566
|
77.558
|
69.193
|
41.368
|
0.000
|
0.000
|
0.000
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.878
|
0.520
|
1.414
|
1.446
|
-0.998
|
— |
-1.013
|
0.886
|
— |
6.669
|
6.683
|
— | — |
No JSON data available for plots.