Hg_chrom1_TN10mRNA_2168
Organism: Heterodera glycines Gene Locus: chr1:18136774-18138928 Feature type: polypeptideProtein Sequence
Length: 345
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.573 | 1.685 | 1.265 | 0.3 | 1.353 | 1.189 | 0.656 | 1.159 | 1.481 | 0.823 | 1.186 | 1.705 | 1.53 | 1.059 | 1.065 | 0.952 | 0.903 | 0.571 | 1.784 | 0.426 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2085
|
— | — |
1.333
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.295
|
0.205
|
0.022
|
0.565
|
0.349
|
0.230
|
0.381
|
0.079
|
0.383
|
0.177
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003145
|
2.000
|
1.000
|
Hsc_gene_6263.t1
|
Hsc_gene_6263.t1
|
F10G8.5
|
P36609.2 Neuronal calcium sensor 2 [Caenorhabditis elegans]
|
XP_024504261.1 EF-hand domain and EF-hand domain pair-containing protein [Strongyloides ratti];CEF65060.1 EF-hand domain and EF-hand domain pair-containing protein [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005509
|
GO:0008150_0.761|GO:0005575_0.724|GO:0110165_0.723|GO:0009987_0.617|GO:0003674_0.607|GO:0005622_0.583|GO:0065007_0.567|GO:0050789_0.553|GO:0005488_0.537|GO:0050794_0.513
|
IPR002048+147-182_151-179_152-212_153-176_183-218_185-258_187-215_187-258_230-265_234-262+|IPR011992+126-270+|IPR018247+160-172_196-208_243-255+|IPR028846+99-270+
|
SM00054+151-179_187-215_234-262+
|
PF00036+153-176+EF_hand|PF13499+185-258+EF-hand_domain_pair
|
G3DSA:1.10.238.10:FF:000009+90-273+Visinin-like_protein_1
|
PTHR23055+99-270+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-60;282-345
|
1.000
|
61-281
|
5t7c_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.656
|
39719.630
|
5.909
|
-3.000
|
30.435
|
11.594
|
54.493
|
45.507
|
15.362
|
15.072
|
46.957
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
33.632
|
5.371
|
17.236
|
7.091
|
6.647
|
8.359
|
111.626
|
151.040
|
1.855
|
30.485
|
18.215
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.458
|
— |
-1.173
|
— | — |
3.750
|
4.074
|
— | — | — | — | — | — |
No JSON data available for plots.