Hg_chrom1_TN10mRNA_2171
Organism: Heterodera glycines Gene Locus: chr1:18151077-18153632 Feature type: polypeptideProtein Sequence
Length: 378
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.8 | 0.923 | 0.722 | 1.368 | 0.617 | 1.085 | 0.598 | 1.19 | 1.646 | 1.251 | 1.323 | 2.49 | 1.543 | 0.611 | 1.188 | 0.945 | 0.824 | 0.922 | 1.628 | 0.545 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2088
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cell_membrane
|
— |
RIMKKRIKAMRK,KKKKRIKAMKRCARR,KRCARRFTGPVISGMKKRI,RRFTGPVISGMKKRIMKKR
|
— | — | — | — | — | — |
0.028
|
— | — |
0.303
|
0.135
|
0.010
|
0.175
|
0.181
|
0.247
|
0.114
|
0.004
|
0.329
|
0.164
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000376
|
1.000
|
7.000
|
Hsc_gene_13205.t1;Hsc_gene_16399.t1;Hsc_gene_23500.t1;Hsc_gene_23826.t1;Hsc_gene_24630.t1;Hsc_gene_8198.t1;Hsc_gene_8202.t1
|
— | — | — |
AAP30770.1 putative gland protein G17G01 [Heterodera glycines]
|
XP_009843917
|
0.290
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
331-378
|
1.000
|
1-330
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.505
|
43187.040
|
10.180
|
30.500
|
24.603
|
11.905
|
44.444
|
55.556
|
16.931
|
7.672
|
44.709
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
1022.355
|
21.872
|
44.170
|
67.088
|
288.413
|
210.445
|
216.875
|
104.476
|
8.612
|
4108.841
|
2351.600
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.782
|
1.480
|
0.713
|
2.073
|
-0.440
|
— |
-1.123
|
1.201
|
-9.027
|
— | — | — | — |
No JSON data available for plots.