Hg_chrom1_TN10mRNA_2175
Organism: Heterodera glycines Gene Locus: chr1:18169130-18171949 Feature type: polypeptideProtein Sequence
Length: 333
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.222 | 1.327 | 0.491 | 1.864 | 1.051 | 0.539 | 0.679 | 1.802 | 0.801 | 1.217 | 1.229 | 2.12 | 1.168 | 0.982 | 0.919 | 0.815 | 1.083 | 0.683 | 2.079 | 0.088 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2092
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — |
29-50
|
0.996
|
12-52
|
0.674
|
— | — |
0.000
|
— | — |
0.136
|
0.096
|
0.013
|
0.114
|
0.162
|
0.313
|
0.358
|
0.032
|
0.480
|
0.751
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000118
|
1.000
|
13.000
|
Hsc_gene_13447.t1;Hsc_gene_13623.t1;Hsc_gene_13623.t2;Hsc_gene_14173.t1;Hsc_gene_14173.t2;Hsc_gene_15848.t1;Hsc_gene_22214.t1;Hsc_gene_22214.t2;Hsc_gene_23840.t1;Hsc_gene_26106.t1;Hsc_gene_26602.t1;Hsc_gene_3944.t1;Hsc_gene_4008.t1
|
— | — | — | — |
MBQ1567039
|
0.390
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-333
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.826
|
36950.920
|
8.685
|
18.000
|
25.225
|
10.811
|
45.345
|
54.655
|
16.216
|
9.009
|
51.952
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
97.711
|
8.205
|
6.811
|
8.656
|
16.289
|
285.881
|
19.456
|
277.383
|
37.248
|
166.045
|
110.846
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — |
0.879
|
4.154
|
-3.871
|
— |
-3.692
|
— | — | — | — | — |
No JSON data available for plots.