Hg_chrom1_TN10mRNA_2176
Organism: Heterodera glycines Gene Locus: chr1:18178585-18180079 Feature type: polypeptideProtein Sequence
Length: 247
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.753 | 2.26 | 0.662 | 0.698 | 0.742 | 0.83 | 0.868 | 1.215 | 1.439 | 1.04 | 0.859 | 1.429 | 1.125 | 0.934 | 1.322 | 0.81 | 0.929 | 0.797 | 1.869 | 1.191 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2093
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — |
29-60
|
0.924
|
— | — | — | — |
0.000
|
— | — |
0.416
|
0.189
|
0.009
|
0.434
|
0.278
|
0.133
|
0.108
|
0.037
|
0.100
|
0.472
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000285
|
9.000
|
0.000
|
0.000
|
Hsc_gene_23847.t1
|
— |
Q4Z8K6.1 Ran-binding proteins 9/10 homolog [Drosophila melanogaster]
|
AFD54150.1 ran-binding protein 6 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.742|GO:0005575_0.654|GO:0110165_0.652|GO:0005622_0.592|GO:0005737_0.547|GO:0009987_0.508
|
IPR001870+34-240+|IPR003877+113-239_123-237+|IPR013320+47-240+|IPR043136+32-247+|IPR044736+126-236+|IPR050618+27-237+
|
SM00449+113-239+
|
PF00622+123-237+SPRY_domain
|
— |
PTHR12864+27-237+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-247
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.914
|
28091.020
|
9.752
|
13.000
|
22.672
|
12.955
|
46.964
|
53.036
|
14.575
|
8.097
|
50.607
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
grey
|
7.531
|
1.525
|
5.628
|
8.973
|
10.931
|
5.625
|
11.467
|
5.650
|
3.792
|
11.430
|
8.157
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.647
|
2.416
|
— | — | — |
1.040
|
— |
1.166
|
— | — | — | — | — |
No JSON data available for plots.