Hg_chrom1_TN10mRNA_2177
Organism: Heterodera glycines Gene Locus: chr1:18183284-18196989 Feature type: polypeptideProtein Sequence
Length: 1,297
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.843 | 1.399 | 1.178 | 1.329 | 1.221 | 0.949 | 0.707 | 1.195 | 1.182 | 1.052 | 1.378 | 1.134 | 1.049 | 1.097 | 0.834 | 0.793 | 0.784 | 0.701 | 0.712 | 1.02 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2094
|
— | — |
1.222
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RKKR,RKDKRAR,KNRRKRQANAHLKK,RRKRQANAHLKKWSK
|
— | — | — | — |
1-19
|
0.967
|
0.829
|
0.000
|
0.000
|
0.222
|
0.167
|
0.060
|
0.183
|
0.171
|
0.050
|
0.145
|
0.009
|
0.243
|
0.862
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000521
|
4.000
|
3.000
|
Hsc_gene_23855.t1;Hsc_gene_23866.t1;Hsc_gene_23866.t2
|
— | — |
D5FM38.1 Zinc metalloproteinase nas-36 [Brugia malayi]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.964|GO:0032501_0.808|GO:0032502_0.613|GO:0048856_0.607|GO:0007275_0.574|GO:0018996_0.510|GO:0042303_0.510|GO:0005575_0.509|GO:0110165_0.509
|
IPR000742+1028-1039+|IPR001506+829-1008_835-1003_854-872_907-925_953-968_990-1003+|IPR006026+831-958+|IPR024079+791-1005+
|
SM00235+831-958+
|
PF01400+835-1003+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+798-1098+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-174
|
1.000
|
175-1297
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.689
|
145865.780
|
6.878
|
7.500
|
29.375
|
10.563
|
49.422
|
50.578
|
15.574
|
13.801
|
50.193
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
1765.110
|
15.484
|
28.182
|
27.364
|
150.490
|
1430.555
|
270.844
|
1211.697
|
2.056
|
6545.335
|
3741.072
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.631
|
0.683
|
— |
2.430
|
3.262
|
-2.391
|
— |
-2.021
|
-10.011
|
— |
-4.893
|
— | — |