Hg_chrom1_TN10mRNA_2178
Organism: Heterodera glycines Gene Locus: chr1:18200402-18202530 Feature type: polypeptideProtein Sequence
Length: 338
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.86 | 2.339 | 0.861 | 0.306 | 1.085 | 1.29 | 1.021 | 1.183 | 1.512 | 1.279 | 0.717 | 1.566 | 0.986 | 0.512 | 0.845 | 0.845 | 0.97 | 0.717 | 0.683 | 0.87 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2095
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
— | — | — | — | — | — |
1-22
|
0.658
|
0.996
|
0.000
|
0.000
|
0.411
|
0.066
|
0.006
|
0.666
|
0.368
|
0.159
|
0.075
|
0.068
|
0.143
|
0.293
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000285
|
9.000
|
0.000
|
0.000
|
— | — |
P18160.3 Dual specificity protein kinase splA [Dictyostelium discoideum]
|
AFD54150.1 ran-binding protein 6 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.727|GO:0005575_0.688|GO:0110165_0.686|GO:0005622_0.621|GO:0005737_0.560|GO:0009987_0.507
|
IPR001870+136-331+|IPR003877+204-330_217-328+|IPR013320+145-331+|IPR043136+134-338+|IPR044736+217-327+|IPR050618+132-329+
|
SM00449+204-330+
|
PF00622+217-328+SPRY_domain
|
— |
PTHR12864+132-329+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
62-125
|
2.000
|
1-61;126-338
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.711
|
37418.010
|
5.621
|
-4.000
|
22.485
|
9.763
|
49.408
|
50.592
|
11.243
|
11.243
|
50.888
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
1413.484
|
19.794
|
102.424
|
2662.691
|
5820.354
|
4499.538
|
529.786
|
723.321
|
131.069
|
701.477
|
457.016
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.141
|
6.933
|
4.811
|
1.096
|
-0.355
|
-3.079
|
-2.748
|
— | — |
4.522
|
3.364
|
— | — |