Hg_chrom1_TN10mRNA_2179
Organism: Heterodera glycines Gene Locus: chr1:18205803-18208578 Feature type: polypeptideProtein Sequence
Length: 300
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.891 | 1.938 | 0.848 | 0.46 | 0.944 | 0.94 | 0.952 | 1.5 | 1.407 | 0.946 | 0.707 | 0.98 | 1.481 | 0.641 | 1.088 | 1.19 | 0.82 | 0.808 | 1.282 | 1.078 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2096
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.833
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.028
|
— | — |
0.413
|
0.150
|
0.010
|
0.498
|
0.416
|
0.166
|
0.089
|
0.132
|
0.169
|
0.324
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000285
|
9.000
|
0.000
|
0.000
|
— | — |
P18160.3 Dual specificity protein kinase splA [Dictyostelium discoideum]
|
AFD54150.1 ran-binding protein 6 [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.734|GO:0005575_0.679|GO:0110165_0.677|GO:0005622_0.618|GO:0005737_0.579|GO:0009987_0.517
|
IPR001870+100-293+|IPR003877+166-292_175-290+|IPR013320+116-293+|IPR043136+91-300+|IPR044736+178-289+|IPR050618+137-290+
|
SM00449+166-292+
|
PF00622+175-290+SPRY_domain
|
— |
PTHR12864+137-290+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-300
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.838
|
33544.560
|
7.194
|
3.500
|
23.333
|
13.667
|
48.667
|
51.333
|
13.000
|
10.333
|
52.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
pink
|
364.607
|
18.556
|
64.073
|
496.235
|
860.338
|
345.735
|
74.172
|
130.442
|
44.192
|
815.932
|
485.186
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.561
|
4.605
|
3.062
|
0.762
|
-1.300
|
-2.213
|
-1.519
|
-0.672
|
-4.317
|
— | — | — | — |
No JSON data available for plots.