Hg_chrom1_TN10mRNA_2180
Organism: Heterodera glycines Gene Locus: chr1:18212728-18214921 Feature type: polypeptideProtein Sequence
Length: 376
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.649 | 2.288 | 0.677 | 0.55 | 1.197 | 0.955 | 1.076 | 0.665 | 1.596 | 1.294 | 0.887 | 1.252 | 1.108 | 0.614 | 0.814 | 1.216 | 0.785 | 0.725 | 0.818 | 0.86 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2097
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-Not_Clustered
|
0.897
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — | — | — |
1-24
|
0.961
|
1.000
|
0.000
|
0.000
|
0.490
|
0.086
|
0.013
|
0.626
|
0.382
|
0.162
|
0.065
|
0.061
|
0.115
|
0.383
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000285
|
9.000
|
0.000
|
0.000
|
— | — |
P18160.3 Dual specificity protein kinase splA [Dictyostelium discoideum]
|
AFD54150.1 ran-binding protein 6 [Heterodera glycines]
|
No
|
-0.150
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0008150_0.752|GO:0005575_0.689|GO:0110165_0.689|GO:0005622_0.594|GO:0005737_0.547|GO:0009987_0.518
|
IPR001870+156-369+|IPR003877+228-368_239-365+|IPR013320+156-369+|IPR043136+156-376+|IPR044736+240-365+|IPR050618+179-366+
|
SM00449+228-368+
|
PF00622+239-365+SPRY_domain
|
— |
PTHR12864+179-366+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-376
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.864
|
41512.850
|
6.061
|
-1.500
|
22.074
|
9.309
|
48.936
|
51.064
|
11.170
|
10.904
|
51.064
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
3513.527
|
289.580
|
647.327
|
5007.096
|
6841.734
|
5880.146
|
896.880
|
1173.930
|
33.261
|
7570.474
|
4340.240
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.932
|
3.975
|
3.060
|
0.419
|
-0.203
|
-2.704
|
-2.435
|
— |
-6.205
|
7.414
|
— | — | — |