Hg_chrom1_TN10mRNA_2183
Organism: Heterodera glycines Gene Locus: chr1:18231564-18244119 Feature type: polypeptideProtein Sequence
Length: 1,325
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.79 | 1.246 | 1.235 | 1.301 | 1.333 | 1.006 | 0.728 | 1.321 | 1.291 | 0.898 | 1.326 | 1.509 | 1.027 | 0.987 | 0.832 | 0.755 | 0.866 | 0.778 | 0.813 | 0.932 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2100
|
— | — |
1.222
|
1.000
|
2.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.987
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
— | — | — | — | — | — |
1-19
|
0.968
|
0.528
|
0.000
|
0.000
|
0.212
|
0.160
|
0.063
|
0.227
|
0.157
|
0.074
|
0.173
|
0.007
|
0.297
|
0.803
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000521
|
4.000
|
3.000
|
Hsc_gene_23855.t1;Hsc_gene_23866.t1;Hsc_gene_23866.t2
|
— | — |
P98061.4 Zinc metalloproteinase nas-28 [Caenorhabditis elegans]
|
KAI3414154.1 Astacin (Peptidase M12A) [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237|GO:0008270
|
GO:0008150_0.889|GO:0032501_0.642|GO:0005575_0.611|GO:0110165_0.610|GO:0032502_0.535|GO:0048856_0.533|GO:0003674_0.519
|
IPR000742+1056-1067+|IPR001506+835-1032_866-1032_871-889_924-942_980-995_1018-1031+|IPR006026+841-985+|IPR024079+787-1034+
|
SM00235+841-985+
|
PF01400+866-1032+Astacin_(Peptidase_family_M12A)
|
— |
PTHR10127+793-1129+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-202
|
1.000
|
203-1325
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.547
|
149425.560
|
6.120
|
-8.500
|
30.264
|
10.566
|
50.113
|
49.887
|
15.472
|
14.792
|
49.660
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
lightyellow
|
305.830
|
3.195
|
18.721
|
142.881
|
129.316
|
383.862
|
149.549
|
1025.974
|
14.655
|
631.953
|
367.397
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
2.317
|
5.339
|
3.037
|
— |
1.583
|
-1.349
|
1.323
|
-2.639
|
-5.562
|
— | — | — | — |