SCN Proteipedia

Hg_chrom1_TN10mRNA_2190

Organism: Heterodera glycines Gene Locus: chr1:18267065-18284026 Feature type: polypeptide

Protein Sequence

Length: 1,167

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.196	1.395	0.81	0.591	0.743	1.846	0.775	2.057	0.724	0.95	0.506	1.109	0.833	1.664	1.119	1.396	1.152	0.701	0.33	0.227	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_2107	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Egg_Male	0.999

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	cytoplasm	—	RRRR,RAEKRTK,PPPKRKY,KKEDAEDDEQQKHLKR	—	—	30-64	0.978	—	—	0.000	—	—	0.433	0.196	0.025	0.703	0.096	0.137	0.156	0.102	0.265	0.122

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006490	1.000	1.000	Hsc_gene_13620.t1	Hsc_gene_13620.t1;Hsc_gene_13621.t1	—	Q9BY84.1 Dual specificity protein phosphatase 16 [Homo sapiens]	KAI3411745.1 Dual specificity protein phosphatase 8 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0006470\|GO:0016311	GO:0008150_0.897\|GO:0003674_0.864\|GO:0009987_0.819\|GO:0005575_0.784\|GO:0110165_0.781\|GO:0065007_0.743\|GO:0050789_0.730\|GO:0050794_0.725\|GO:0005622_0.693\|GO:0003824_0.658\|GO:0016787_0.645\|GO:0050896_0.636\|GO:0008152_0.619\|GO:0016788_0.616\|GO:0140096_0.605\|GO:0016791_0.604\|GO:0042578_0.604\|GO:0044237_0.599\|GO:0051716_0.570\|GO:0004721_0.568\|GO:0048519_0.557\|GO:0048523_0.542\|GO:0007154_0.538\|GO:0023052_0.537\|GO:0007165_0.523\|GO:0043170_0.512\|GO:0044238_0.506\|GO:0016020_0.504	IPR000340+378-510+\|IPR000387+435-495+\|IPR003595+416-513+\|IPR016130+456-466+\|IPR020422+370-511_370-514+\|IPR029021+354-518_370-515+	SM00195+370-511+\|SM00404+416-513+	PF00782+378-510+Dual_specificity_phosphatase,_catalytic_domain	—	PTHR10159+180-1027+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-263;521-1167	1.000	264-520	4yr8_H	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.906	125368.290	7.578	23.000	21.851	8.312	51.842	48.158	12.939	8.912	59.040

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	darkgrey	2539.572	5134.422	2624.098	1945.295	1507.339	1580.664	2578.567	3447.530	1393.492	3008.791	2316.520

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.198	-1.537	-0.323	-0.400	—	0.715	1.029	—	—	—	—	—	—

No JSON data available for plots.

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