Hg_chrom1_TN10mRNA_2191
Organism: Heterodera glycines Gene Locus: chr1:18284265-18289132 Feature type: polypeptideProtein Sequence
Length: 613
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.536 | 2.011 | 0.86 | 0.169 | 0.571 | 0.753 | 1.437 | 1.223 | 0.58 | 0.551 | 0.742 | 1.631 | 1.495 | 1.004 | 0.499 | 1.002 | 1.524 | 1.013 | 0.502 | 0.288 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2108
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.196
|
0.107
|
0.016
|
0.646
|
0.192
|
0.441
|
0.356
|
0.024
|
0.465
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006491
|
1.000
|
1.000
|
Hsc_gene_13617.t1
|
Hsc_gene_13617.t1
|
— |
P98081.2 Protein disabled [Drosophila melanogaster]
|
KAI1727446.1 phosphotyrosine interaction domain (PTB/PID) domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.881|GO:0005575_0.828|GO:0110165_0.822|GO:0009987_0.803|GO:0003674_0.702|GO:0005622_0.685|GO:0032502_0.637|GO:0048856_0.637|GO:0032501_0.621|GO:0065007_0.616|GO:0016020_0.613|GO:0050789_0.610|GO:0005488_0.609|GO:0050794_0.595|GO:0005737_0.572|GO:0030154_0.562|GO:0048869_0.562|GO:0007275_0.550|GO:0071840_0.548|GO:0016043_0.543|GO:0005515_0.537|GO:0048518_0.529|GO:0048522_0.527|GO:0050896_0.527|GO:0051179_0.503
|
IPR006020+79-211_79-218_84-206+|IPR011993+67-223+|IPR048561+71-204+
|
SM00462+79-211+
|
PF00640+84-206+Phosphotyrosine_interaction_domain_(PTB/PID)
|
— |
PTHR47695+54-336+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-73;206-399;440-613
|
2.000
|
74-205;400-439
|
1oqn_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.916
|
63084.730
|
6.783
|
2.500
|
17.945
|
9.462
|
45.840
|
54.160
|
9.788
|
8.157
|
67.374
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
orange
|
grey
|
3185.931
|
2340.866
|
3273.425
|
1763.562
|
2246.459
|
4932.641
|
5371.834
|
4609.860
|
923.994
|
4043.460
|
2706.546
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.255
|
-0.546
|
-0.784
|
0.317
|
1.150
|
— | — |
0.365
|
-2.234
|
— | — | — | — |
No JSON data available for plots.