Hg_chrom1_TN10mRNA_2192
Organism: Heterodera glycines Gene Locus: chr1:18308016-18310144 Feature type: polypeptideProtein Sequence
Length: 450
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.543 | 1.085 | 1.333 | 0.766 | 0.519 | 0.969 | 0.45 | 1.111 | 1.679 | 1.772 | 0.707 | 1.569 | 2.284 | 1.111 | 1.043 | 1.111 | 0.765 | 0.707 | 2.222 | 0.327 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2109
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
RRFDLRVDEHFKTRKW
|
40-65
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.484
|
0.188
|
0.046
|
0.483
|
0.480
|
0.196
|
0.281
|
0.018
|
0.268
|
0.319
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000085
|
2.000
|
14.000
|
Hsc_gene_11020.t1;Hsc_gene_13615.t1;Hsc_gene_13616.t1;Hsc_gene_16435.t1;Hsc_gene_16717.t1;Hsc_gene_26224.t1;Hsc_gene_26225.t1;Hsc_gene_26228.t1;Hsc_gene_26258.t1;Hsc_gene_26568.t1;Hsc_gene_26568.t2;Hsc_gene_4055.t1;Hsc_gene_4412.t1;Hsc_gene_9535.t1
|
— | — | — |
KAI3416556.1 hypothetical protein GPALN_006096 [Globodera pallida]
|
XP_024190021
|
0.400
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-450
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.645
|
51905.350
|
6.807
|
2.000
|
22.444
|
14.444
|
43.333
|
56.667
|
12.000
|
10.444
|
45.556
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
224.091
|
4.801
|
8.687
|
33.236
|
144.838
|
296.105
|
64.467
|
340.155
|
0.514
|
645.405
|
369.023
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.651
|
2.043
|
2.093
|
1.046
|
-2.193
|
— |
-2.256
|
-9.656
|
5.428
|
— | — | — |
No JSON data available for plots.