Hg_chrom1_TN10mRNA_2196
Organism: Heterodera glycines Gene Locus: chr1:18324563-18329463 Feature type: polypeptideProtein Sequence
Length: 536
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.911 | 0.868 | 0.984 | 0.45 | 0.84 | 1.483 | 1.266 | 1.493 | 1.119 | 0.933 | 0.791 | 0.878 | 0.985 | 1.076 | 1.18 | 0.88 | 1.285 | 1.159 | 1.005 | 0.219 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2113
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKPR,RRGRKRKS
|
20-43
|
0.932
|
36-76
|
0.922
|
— | — |
0.000
|
— | — |
0.923
|
0.097
|
0.012
|
0.312
|
0.042
|
0.036
|
0.033
|
0.009
|
0.052
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006493
|
1.000
|
1.000
|
Hsc_gene_26220.t1
|
Hsc_gene_26220.t1
|
— |
Q18211.1 Regulator of chromosome condensation [Caenorhabditis elegans]
|
KAI1719948.1 regulator of chromosome condensation (RCC1) repeat domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.830|GO:0005575_0.702|GO:0110165_0.685|GO:0009987_0.592|GO:0005622_0.576|GO:0003674_0.575|GO:0016020_0.543|GO:0065007_0.539|GO:0050789_0.516|GO:0005737_0.506
|
IPR000408+52-102_86-99_105-121_162-220_207-217_207-223_223-237_371-392_436-491_437-494+|IPR009091+43-497_56-492+|IPR051553+27-392+
|
— |
PF00415+436-491+Regulator_of_chromosome_condensation_(RCC1)_repeat|PF13540+86-114_145-169_204-233+Regulator_of_chromosome_condensation_(RCC1)_repeat
|
— |
PTHR45982+27-392+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-84;492-536
|
1.000
|
85-491
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.834
|
57822.240
|
8.205
|
11.000
|
24.440
|
8.582
|
47.948
|
52.052
|
13.993
|
10.448
|
56.157
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
darkgrey
|
1805.988
|
935.964
|
784.475
|
1417.260
|
1807.312
|
1360.704
|
1871.127
|
653.838
|
677.886
|
4081.278
|
2622.681
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.485
|
0.462
|
0.963
|
0.319
|
-0.395
|
0.469
|
-1.162
|
1.658
|
-2.691
|
— | — | — | — |
No JSON data available for plots.