Hg_chrom1_TN10mRNA_2197
Organism: Heterodera glycines Gene Locus: chr1:18331167-18333643 Feature type: polypeptideProtein Sequence
Length: 377
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.524 | 0.864 | 1.013 | 0.549 | 1.282 | 1.224 | 0.726 | 1.061 | 2.004 | 1.326 | 1.005 | 1.404 | 1.842 | 1.122 | 0.758 | 1.175 | 0.565 | 0.764 | 1.632 | 0.312 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2114
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
6-pJ2_J3_J4_Male
|
0.981
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
RKWTLGKMEIRSKIRRWRL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.612
|
0.218
|
0.101
|
0.581
|
0.127
|
0.071
|
0.107
|
0.011
|
0.164
|
0.299
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000768
|
1.000
|
5.000
|
Hsc_gene_14786.t1;Hsc_gene_20465.t1;Hsc_gene_21851.t1;Hsc_gene_25443.t1;Hsc_gene_4094.t1
|
Hsc_gene_14786.t1;Hsc_gene_20465.t1;Hsc_gene_21851.t1;Hsc_gene_25443.t1;Hsc_gene_4094.t1
|
— | — |
KAI3411074.1 hypothetical protein GPALN_003159 [Globodera pallida]
|
OBT60972
|
0.250
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-2;351-377
|
1.000
|
3-350
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.553
|
42781.260
|
5.171
|
-7.000
|
25.729
|
11.936
|
45.889
|
54.111
|
12.467
|
13.263
|
44.032
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
blue
|
1115.168
|
7.889
|
20.809
|
31.426
|
62.996
|
42.753
|
37.596
|
38.174
|
0.000
|
4788.246
|
2736.140
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.171
|
1.859
|
0.701
|
0.973
|
-0.544
|
— | — | — |
-10.393
|
5.831
|
-5.601
|
— | — |
No JSON data available for plots.