Hg_chrom1_TN10mRNA_2206
Organism: Heterodera glycines Gene Locus: chr1:18359824-18363815 Feature type: polypeptideProtein Sequence
Length: 291
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.559 | 0.879 | 1.562 | 0.474 | 1.203 | 0.969 | 0.409 | 1.546 | 0.764 | 1.625 | 0.833 | 1.617 | 2.005 | 0.727 | 1.613 | 0.687 | 1.183 | 0.833 | 1.057 | 0.707 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2122
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.950
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RHRR
|
3-29
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.090
|
0.980
|
0.005
|
0.097
|
0.036
|
0.010
|
0.031
|
0.015
|
0.031
|
0.012
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001753
|
3.000
|
1.000
|
Hsc_gene_26206.t1
|
Hsc_gene_26206.t1
|
— |
P82649.2 Small ribosomal subunit protein mS22 [Bos taurus]
|
KAI3411737.1 Mitochondrial 28S ribosomal protein S22 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.870|GO:0110165_0.868|GO:0005622_0.829|GO:0016020_0.789|GO:0005737_0.776|GO:0043226_0.756|GO:0043229_0.746|GO:0043227_0.733|GO:0043231_0.715|GO:0003674_0.653|GO:0005739_0.568|GO:0008150_0.503
|
IPR019374+31-273_47-279+
|
— |
PF10245+47-279+Mitochondrial_28S_ribosomal_protein_S22
|
— |
PTHR13071+31-273+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-291
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.704
|
34243.000
|
6.051
|
-2.500
|
32.302
|
14.089
|
51.890
|
48.110
|
16.495
|
15.808
|
43.299
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
161.766
|
163.724
|
130.709
|
179.974
|
191.150
|
132.400
|
158.534
|
102.836
|
233.214
|
135.570
|
177.417
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.558
|
— |
0.573
|
— |
-0.515
|
— |
-0.469
|
0.764
|
— | — | — | — | — |
No JSON data available for plots.