Hg_chrom1_TN10mRNA_2207
Organism: Heterodera glycines Gene Locus: chr1:18363887-18370253 Feature type: polypeptideProtein Sequence
Length: 677
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.219 | 0.996 | 0.618 | 0.56 | 0.591 | 0.833 | 0.809 | 1.034 | 0.985 | 1.816 | 0.313 | 1.39 | 2.011 | 0.881 | 1.417 | 1.245 | 0.726 | 0.918 | 1.591 | 0.652 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2123
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.342
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
11-31
|
0.985
|
— | — | — | — |
0.000
|
— | — |
0.153
|
0.194
|
0.015
|
0.136
|
0.795
|
0.263
|
0.463
|
0.011
|
0.166
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003148
|
2.000
|
1.000
|
Hsc_gene_26205.t1
|
Hsc_gene_26205.t1
|
— |
P54002.2 Alpha-1,2-mannosyltransferase algn-9 [Caenorhabditis elegans]
|
KAI6227828.1 Alg9 mannosyltransferase domain containing protein [Aphelenchoides besseyi]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016757
|
GO:0005575_0.925|GO:0110165_0.925|GO:0016020_0.887|GO:0071944_0.887|GO:0005886_0.878|GO:0005622_0.768|GO:0043226_0.748|GO:0005737_0.732|GO:0043227_0.717|GO:0003674_0.715|GO:0043229_0.713|GO:0043231_0.702|GO:0005773_0.698|GO:0012505_0.678|GO:0008150_0.654|GO:0009987_0.610|GO:0005783_0.599|GO:0003824_0.559|GO:0016740_0.529|GO:0016757_0.512|GO:0016758_0.512
|
IPR005599+87-581_88-574+
|
— |
PF03901+88-574+Alg9-like_mannosyltransferase_family
|
— |
PTHR22760+87-581+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-677
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.860
|
75055.910
|
9.422
|
21.000
|
18.021
|
13.589
|
38.700
|
61.300
|
11.078
|
6.942
|
50.369
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
red
|
131.742
|
137.319
|
128.280
|
84.594
|
133.073
|
140.496
|
101.413
|
99.752
|
53.785
|
226.682
|
152.583
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.328
|
-0.836
|
-0.491
|
0.623
|
— |
-0.461
|
-0.602
|
— | — | — | — | — | — |
No JSON data available for plots.