Hg_chrom1_TN10mRNA_2208
Organism: Heterodera glycines Gene Locus: chr1:18370109-18373626 Feature type: polypeptideProtein Sequence
Length: 503
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.902 | 1.202 | 1.265 | 0.823 | 1.359 | 0.918 | 0.852 | 1.392 | 0.972 | 1.128 | 0.904 | 2.105 | 1.27 | 0.803 | 1.258 | 0.596 | 1.141 | 0.542 | 1.223 | 0.76 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2124
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KRQK,RKAPLYQGGTRKQMLKRLR,KRLRDHHRKELIEHRKKNH
|
— | — | — | — | — | — |
0.000
|
— | — |
0.497
|
0.189
|
0.021
|
0.627
|
0.079
|
0.148
|
0.100
|
0.021
|
0.105
|
0.121
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003149
|
2.000
|
1.000
|
Hsc_gene_26204.t1
|
Hsc_gene_26204.t1
|
— |
O44406.2 3'-5' exonuclease eri-1 [Caenorhabditis elegans]
|
KAH7720474.1 exonuclease [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0000175|GO:0003676
|
GO:0003674_0.845|GO:0008150_0.828|GO:0005575_0.730|GO:0110165_0.725|GO:0009987_0.714|GO:0008152_0.704|GO:0043170_0.659|GO:0044238_0.640|GO:0005622_0.629|GO:0006139_0.572|GO:0003824_0.566|GO:0044237_0.556|GO:0090304_0.543|GO:0009058_0.540|GO:0005737_0.533|GO:0071840_0.520|GO:0044249_0.519|GO:0009059_0.507
|
IPR003034+19-53+|IPR012337+72-283+|IPR013520+76-277_78-267+|IPR036397+64-312+|IPR047201+77-272+|IPR051274+41-314+
|
SM00479+76-277+
|
PF00929+78-267+Exonuclease
|
— |
PTHR23044+41-314+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
360-503
|
1.000
|
1-359
|
1w0h_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.570
|
57074.400
|
5.518
|
-8.000
|
30.020
|
11.531
|
49.901
|
50.099
|
14.911
|
15.109
|
48.310
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
turquoise
|
41.623
|
24.194
|
14.212
|
10.594
|
12.744
|
15.672
|
95.389
|
56.060
|
9.480
|
89.166
|
55.015
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.994
|
-1.329
|
— | — | — |
2.619
|
1.735
|
0.912
|
-3.317
|
— | — | — | — |
No JSON data available for plots.