SCN Proteipedia

Hg_chrom1_TN10mRNA_2213

Organism: Heterodera glycines Gene Locus: chr1:18397515-18398762 Feature type: polypeptide

Protein Sequence

Length: 65

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.252	1.073	0.0	0.531	0.513	1.578	0.733	0.769	1.368	0.624	1.399	1.81	2.137	1.183	0.942	0.879	0.0	2.098	1.183	0.905	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_2129	—	—	1.444	1.000	2.000	1.000	1.000	2.000	2.000	1.000	2.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	1-Not_Clustered	0.580

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	endoplasmic_reticulum	—	—	—	—	—	—	—	—	0.000	—	—	0.314	0.214	0.046	0.153	0.543	0.141	0.288	0.002	0.194	0.042

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	—	—	Q3T073.1 Stress-associated endoplasmic reticulum protein 2 [Bos taurus]	KAK6031073.1 ribosome associated membrane protein RAMP4 [Ostertagia ostertagi]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005783	GO:0005575_0.935\|GO:0110165_0.932\|GO:0008150_0.916\|GO:0009987_0.840\|GO:0005622_0.747\|GO:0008152_0.696\|GO:0009058_0.694\|GO:0044237_0.694\|GO:0019538_0.691\|GO:0043170_0.691\|GO:0044238_0.691\|GO:0044249_0.689\|GO:0009059_0.688\|GO:0016020_0.557\|GO:0005737_0.480\|GO:0065007_0.472\|GO:0071944_0.464\|GO:0005886_0.461\|GO:0050896_0.459\|GO:0050789_0.452\|GO:0043226_0.445\|GO:0043229_0.443\|GO:0006810_0.432\|GO:0051179_0.432\|GO:0051234_0.432\|GO:0050794_0.425\|GO:0043227_0.421\|GO:0043231_0.421\|GO:0051716_0.403\|GO:0006950_0.399\|GO:0023052_0.390\|GO:0007154_0.384\|GO:0032501_0.380\|GO:0048518_0.376\|GO:0007165_0.371\|GO:0071840_0.370\|GO:0031090_0.367\|GO:0071705_0.367\|GO:0016043_0.366\|GO:0065008_0.365\|GO:0032879_0.362\|GO:0048522_0.362\|GO:0051641_0.359\|GO:0032502_0.354\|GO:0051049_0.354\|GO:0048856_0.353\|GO:0051239_0.353\|GO:0061024_0.353\|GO:0010467_0.351\|GO:0019222_0.351	IPR010580+1-60_2-61+	—	PF06624+2-61+Ribosome_associated_membrane_protein_RAMP4	—	PTHR15601+1-60+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-65	9ygy_G	STRUCT_HOMOLOG

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.609	7266.650	10.866	7.500	18.462	13.846	35.385	64.615	15.385	3.077	49.231

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	orange	grey	6278.101	3305.917	5696.702	3383.533	4165.397	14172.392	4654.628	6386.713	8084.805	5741.109	6745.550

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	0.556	-0.104	-0.643	0.268	1.782	-1.598	-1.254	-0.315	—	-1.091	—	—	—

No JSON data available for plots.

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