Hg_chrom1_TN10mRNA_2215
Organism: Heterodera glycines Gene Locus: chr1:18403851-18410175 Feature type: polypeptideProtein Sequence
Length: 710
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.196 | 1.048 | 0.615 | 0.534 | 0.587 | 0.867 | 0.771 | 1.056 | 1.127 | 1.789 | 0.384 | 1.408 | 2.034 | 0.975 | 1.322 | 1.227 | 0.623 | 0.918 | 1.517 | 0.663 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2131
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
20-Not_Clustered
|
0.468
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — |
11-31
|
0.985
|
— | — | — | — |
0.000
|
— | — |
0.166
|
0.196
|
0.018
|
0.133
|
0.794
|
0.245
|
0.433
|
0.011
|
0.165
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003148
|
2.000
|
1.000
|
Hsc_gene_26205.t1
|
Hsc_gene_26205.t1
|
— |
P54002.2 Alpha-1,2-mannosyltransferase algn-9 [Caenorhabditis elegans]
|
KAH7727258.1 plasmid Maintenance protein containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016757
|
GO:0005575_0.922|GO:0110165_0.922|GO:0016020_0.896|GO:0071944_0.873|GO:0005886_0.859|GO:0005622_0.778|GO:0043226_0.763|GO:0005737_0.751|GO:0043227_0.739|GO:0043229_0.739|GO:0043231_0.739|GO:0003674_0.714|GO:0005773_0.707|GO:0012505_0.683|GO:0008150_0.655|GO:0005783_0.609|GO:0009987_0.608|GO:0003824_0.562|GO:0016740_0.528|GO:0016757_0.509|GO:0016758_0.509
|
IPR005599+87-656_88-575+
|
— |
PF03901+88-575+Alg9-like_mannosyltransferase_family
|
— |
PTHR22760+87-656+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-710
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.867
|
78843.520
|
9.491
|
22.500
|
18.028
|
13.662
|
38.310
|
61.690
|
11.127
|
6.901
|
49.718
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
276.229
|
192.705
|
180.290
|
136.068
|
188.329
|
210.946
|
139.989
|
141.835
|
83.972
|
699.212
|
435.538
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.327
|
-0.639
|
-0.296
|
0.438
|
— |
-0.582
|
-0.679
|
— | — | — | — | — | — |
No JSON data available for plots.