Hg_chrom1_TN10mRNA_2216
Organism: Heterodera glycines Gene Locus: chr1:18410348-18413292 Feature type: polypeptideProtein Sequence
Length: 207
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.562 | 0.899 | 1.932 | 0.5 | 1.288 | 0.991 | 0.403 | 1.208 | 0.644 | 1.306 | 0.805 | 1.989 | 2.281 | 0.836 | 1.577 | 0.345 | 1.109 | 1.025 | 1.115 | 0.853 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2132
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
0.995
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.156
|
0.894
|
0.071
|
0.432
|
0.070
|
0.012
|
0.017
|
0.052
|
0.056
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001753
|
3.000
|
1.000
|
Hsc_gene_26206.t1
|
Hsc_gene_26206.t1
|
— |
P82649.2 Small ribosomal subunit protein mS22 [Bos taurus]
|
KAI3411737.1 Mitochondrial 28S ribosomal protein S22 [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.864|GO:0110165_0.856|GO:0005622_0.821|GO:0005737_0.800|GO:0016020_0.773|GO:0043226_0.741|GO:0043229_0.728|GO:0043227_0.720|GO:0043231_0.705|GO:0003674_0.653|GO:0005739_0.573
|
IPR019374+1-189_1-195+
|
— |
PF10245+1-195+Mitochondrial_28S_ribosomal_protein_S22
|
— |
PTHR13071+1-189+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-207
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.889
|
24580.840
|
4.718
|
-8.500
|
33.816
|
14.976
|
50.725
|
49.275
|
15.459
|
18.357
|
44.444
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
grey
|
44.287
|
16.503
|
11.869
|
11.442
|
10.372
|
10.788
|
99.238
|
43.617
|
32.900
|
92.646
|
67.041
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.708
|
— | — | — | — |
3.216
|
1.910
|
1.332
|
— | — | — | — | — |
No JSON data available for plots.