Hg_chrom1_TN10mRNA_2219
Organism: Heterodera glycines Gene Locus: chr1:18431098-18433734 Feature type: polypeptideProtein Sequence
Length: 389
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.196 | 0.897 | 1.589 | 1.064 | 0.557 | 0.989 | 0.673 | 1.285 | 1.257 | 1.285 | 0.935 | 2.419 | 1.642 | 0.939 | 0.787 | 0.845 | 0.801 | 0.818 | 0.791 | 0.378 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2135
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
22-44
|
0.998
|
15-37
|
0.999
|
— | — |
0.197
|
— | — |
0.229
|
0.332
|
0.035
|
0.596
|
0.267
|
0.256
|
0.197
|
0.010
|
0.358
|
0.476
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003150
|
2.000
|
1.000
|
Hsc_gene_26193.t1
|
Hsc_gene_26193.t1
|
— |
Q8VCT9.1 Dual specificity testis-specific protein kinase 2 [Mus musculus]
|
KAI1727572.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.881|GO:0009987_0.782|GO:0005575_0.780|GO:0110165_0.780|GO:0005622_0.700|GO:0003674_0.690|GO:0003824_0.627|GO:0065007_0.627|GO:0050789_0.617|GO:0050794_0.556|GO:0016740_0.546|GO:0005737_0.530|GO:0140096_0.526|GO:0008152_0.517|GO:0016020_0.515
|
IPR000719+49-344+|IPR001245+50-337_140-153_193-211_245-255_264-286_309-331+|IPR008266+199-211+|IPR011009+43-346+|IPR050940+29-338+
|
— |
PF07714+50-337+Protein_tyrosine_and_serine/threonine_kinase
|
— |
PTHR46485+29-338+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-389
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.513
|
42941.490
|
5.993
|
-3.000
|
24.679
|
10.797
|
43.188
|
56.812
|
12.596
|
12.082
|
52.699
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
cyan
|
116.430
|
157.354
|
80.324
|
82.051
|
140.834
|
264.619
|
260.419
|
239.048
|
6.362
|
45.368
|
28.651
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.200
|
-1.077
|
— |
0.748
|
0.925
|
— | — | — | — | — | — | — | — |
No JSON data available for plots.