Hg_chrom1_TN10mRNA_2225
Organism: Heterodera glycines Gene Locus: chr1:18449794-18451215 Feature type: polypeptideProtein Sequence
Length: 266
(Signal peptide: 1-34)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.874 | 0.787 | 1.435 | 1.426 | 0.564 | 0.964 | 0.448 | 0.752 | 1.337 | 1.575 | 0.797 | 1.548 | 3.028 | 0.723 | 0.307 | 1.074 | 0.801 | 0.911 | 1.446 | 0.774 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2140
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide
|
lysosome_vacuole
|
— | — | — | — | — | — |
1-34
|
— |
0.663
|
— |
3.000
|
0.256
|
0.166
|
0.008
|
0.172
|
0.264
|
0.649
|
0.256
|
0.007
|
0.354
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000522
|
3.000
|
4.000
|
Hsc_gene_716.t1;Hsc_gene_721.t1;Hsc_gene_721.t2;Hsc_gene_721.t3
|
Hsc_gene_16983.t1;Hsc_gene_21825.t1;Hsc_gene_716.t1;Hsc_gene_721.t1;Hsc_gene_721.t2;Hsc_gene_9547.t1
|
— | — |
AAP30770.1 putative gland protein G17G01 [Heterodera glycines]
|
WP_341367083
|
0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-266
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.747
|
30191.010
|
4.411
|
-10.000
|
19.549
|
16.917
|
39.098
|
60.902
|
8.271
|
11.278
|
48.872
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
629.243
|
4.201
|
7.938
|
17.070
|
70.438
|
2301.506
|
43.901
|
2675.739
|
15.203
|
821.238
|
475.794
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.884
|
1.209
|
2.016
|
5.043
|
-5.703
|
— |
-5.782
|
-5.873
|
— | — | — | — |