SCN Proteipedia

Hg_chrom1_TN10mRNA_223

Organism: Heterodera glycines Gene Locus: chr1:1612560-1619314 Feature type: polypeptide

Protein Sequence

Length: 569

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.736	1.594	0.543	0.424	0.849	1.712	0.398	1.318	1.328	0.974	0.453	2.068	1.562	1.082	1.363	1.08	0.836	1.118	2.028	1.344	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_217	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	10-Pre_planta	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RKIKRRK	—	—	—	—	—	—	0.000	—	—	0.068	0.110	0.073	0.132	0.128	0.216	0.201	0.007	0.775	0.050

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005615	1.000	1.000	Hsc_gene_3917.t1	Hsc_gene_15618.t1;Hsc_gene_3917.t1	—	P41849.3 Ligand-gated ion channel 50 [Caenorhabditis elegans]	KAI1719625.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004888\|GO:0005216\|GO:0005230\|GO:0006811\|GO:0016020\|GO:0034220	GO:0008150_0.959\|GO:0009987_0.917\|GO:0005575_0.857\|GO:0110165_0.857\|GO:0016020_0.784\|GO:0065007_0.769\|GO:0003674_0.756\|GO:0050789_0.749\|GO:0051179_0.703\|GO:0071944_0.698\|GO:0051234_0.692\|GO:0006810_0.687\|GO:0005886_0.671\|GO:0007154_0.663\|GO:0023052_0.660\|GO:0006811_0.608\|GO:0055085_0.603\|GO:0050794_0.595\|GO:0034220_0.579\|GO:0050896_0.561\|GO:0007267_0.547\|GO:0051716_0.532\|GO:0032501_0.522\|GO:0005215_0.516\|GO:0022857_0.516\|GO:0030054_0.503\|GO:0015075_0.502	IPR006028+291-311_317-338_351-372_534-554+\|IPR006029+295-551+\|IPR006201+83-452_125-141_160-171_206-220_282-294+\|IPR006202+81-287+\|IPR036719+289-557+\|IPR036734+74-285_81-287+\|IPR038050+286-560+	—	PF02931+81-287+Neurotransmitter-gated_ion-channel_ligand_binding_domain\|PF02932+295-551+Neurotransmitter-gated_ion-channel_transmembrane_region	—	PTHR18945+83-452+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-569	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.816	66377.830	9.071	16.500	20.387	15.466	46.573	53.427	12.302	8.084	46.397

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	grey	139.357	419.272	148.184	48.124	18.236	13.057	35.088	53.832	55.586	292.077	190.724

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-1.730	-3.260	-1.514	-1.434	—	1.436	1.939	-0.476	—	—	—	—	5.783

No JSON data available for plots.

Back to Browser