Hg_chrom1_TN10mRNA_2231
Organism: Heterodera glycines Gene Locus: chr1:18465215-18466408 Feature type: polypeptideProtein Sequence
Length: 150
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.93 | 0.775 | 1.697 | 0.92 | 0.889 | 0.342 | 0.794 | 1.333 | 1.63 | 1.261 | 1.111 | 1.176 | 1.481 | 0.897 | 0.816 | 0.476 | 1.093 | 1.01 | 2.051 | 0.392 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2146
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — |
Hsc_gene_26180
|
— |
27-ppJ2_pJ2_J3_J4_Female_Male
|
0.986
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-19
|
0.967
|
1.000
|
0.000
|
0.000
|
0.240
|
0.534
|
0.188
|
0.320
|
0.356
|
0.158
|
0.278
|
0.013
|
0.326
|
0.888
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006499
|
1.000
|
1.000
|
Hsc_gene_26180.t1
|
Hsc_gene_26180.t1
|
— | — |
AKU46811.1 transthyretin-like protein, partial [Meloidogyne javanica]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0009986
|
— |
IPR001534+9-149_28-115+|IPR038479+21-146+
|
— |
PF01060+28-115+Transthyretin-like_family
|
— |
PTHR21700+9-149+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-150
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.690
|
16809.350
|
5.226
|
-3.000
|
28.667
|
12.000
|
43.333
|
56.667
|
14.000
|
14.667
|
51.333
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
grey
|
2176.207
|
911.874
|
1997.414
|
2262.299
|
2212.025
|
2820.715
|
2601.941
|
6078.960
|
880.672
|
1778.443
|
1393.684
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.903
|
1.174
|
0.288
|
— |
0.366
|
— |
1.004
|
-1.081
|
— | — | — | — | — |