Hg_chrom1_TN10mRNA_2237
Organism: Heterodera glycines Gene Locus: chr1:18481777-18483649 Feature type: polypeptideProtein Sequence
Length: 368
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.6 | 0.885 | 1.68 | 0.656 | 0.589 | 0.836 | 0.582 | 0.951 | 1.57 | 1.432 | 0.618 | 1.918 | 1.887 | 1.359 | 1.442 | 1.087 | 0.535 | 0.7 | 2.926 | 0.32 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2152
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
nucleus
|
— |
KKRRRPRE,RRFDLRVDEHFKTRKW
|
76-96
|
0.864
|
— | — | — | — |
0.000
|
— | — |
0.523
|
0.381
|
0.028
|
0.416
|
0.333
|
0.126
|
0.221
|
0.011
|
0.170
|
0.196
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000021
|
31.000
|
9.000
|
Hsc_gene_12092.t1;Hsc_gene_13746.t1;Hsc_gene_1386.t1;Hsc_gene_16433.t1;Hsc_gene_20441.t1;Hsc_gene_20629.t1;Hsc_gene_23777.t1;Hsc_gene_2877.t1;Hsc_gene_7671.t1
|
— | — | — |
KAI3411088.1 hypothetical protein GPALN_003173 [Globodera pallida]
|
CAG9316067
|
0.010
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
362-368
|
1.000
|
1-361
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.628
|
42517.940
|
5.925
|
-2.500
|
25.815
|
13.587
|
43.750
|
56.250
|
13.043
|
12.772
|
47.554
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
115.539
|
3.701
|
10.251
|
28.382
|
89.678
|
296.717
|
54.205
|
227.855
|
0.000
|
238.936
|
136.535
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.244
|
2.808
|
1.576
|
1.630
|
1.741
|
-2.443
|
— |
-1.927
|
-6.823
|
5.684
|
— | — | — |
No JSON data available for plots.