Hg_chrom1_TN10mRNA_2238
Organism: Heterodera glycines Gene Locus: chr1:18489786-18491557 Feature type: polypeptideProtein Sequence
Length: 372
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.656 | 0.813 | 1.564 | 0.556 | 0.672 | 0.827 | 0.544 | 0.941 | 1.732 | 1.417 | 0.733 | 1.423 | 1.792 | 1.447 | 1.317 | 0.96 | 0.705 | 0.733 | 2.895 | 0.395 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2153
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RVKKRRR,VKKRRRPPKK,RRFDFYVDEHFKTRKW
|
20-43
|
0.828
|
— | — | — | — |
0.000
|
— | — |
0.473
|
0.362
|
0.034
|
0.416
|
0.297
|
0.115
|
0.199
|
0.008
|
0.216
|
0.130
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000021
|
31.000
|
9.000
|
Hsc_gene_12092.t1;Hsc_gene_13746.t1;Hsc_gene_1386.t1;Hsc_gene_16433.t1;Hsc_gene_20441.t1;Hsc_gene_20629.t1;Hsc_gene_23777.t1;Hsc_gene_2877.t1;Hsc_gene_7671.t1
|
— | — | — |
KAI3411121.1 hypothetical protein GPALN_003204 [Globodera pallida]
|
WP_339912635
|
0.130
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
372-372
|
1.000
|
1-371
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.609
|
42884.460
|
6.169
|
-1.500
|
25.806
|
13.441
|
43.548
|
56.452
|
13.172
|
12.634
|
47.312
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
178.696
|
4.363
|
5.422
|
25.374
|
109.410
|
392.709
|
85.408
|
381.958
|
0.514
|
404.666
|
231.458
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.404
|
2.333
|
2.079
|
1.857
|
-2.191
|
— |
-2.014
|
-8.998
|
5.038
|
— | — | — |
No JSON data available for plots.