Hg_chrom1_TN10mRNA_2243
Organism: Heterodera glycines Gene Locus: chr1:18503502-18506540 Feature type: polypeptideProtein Sequence
Length: 339
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.166 | 0.96 | 1.824 | 1.119 | 0.639 | 1.135 | 0.702 | 1.18 | 1.245 | 1.276 | 0.894 | 2.429 | 1.475 | 1.078 | 0.722 | 0.632 | 0.677 | 0.849 | 0.908 | 0.347 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2158
|
— | — |
1.111
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
1-J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.321
|
0.323
|
0.006
|
0.658
|
0.188
|
0.439
|
0.145
|
0.014
|
0.401
|
0.126
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003150
|
2.000
|
1.000
|
Hsc_gene_26193.t1
|
Hsc_gene_26193.t1
|
— |
Q8VCT9.1 Dual specificity testis-specific protein kinase 2 [Mus musculus]
|
KAI1727572.1 protein tyrosine kinase domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
GO:0008150_0.877|GO:0009987_0.776|GO:0005575_0.766|GO:0110165_0.764|GO:0005622_0.698|GO:0003674_0.695|GO:0003824_0.639|GO:0065007_0.622|GO:0050789_0.615|GO:0050794_0.559|GO:0016740_0.555|GO:0005737_0.536|GO:0008152_0.533|GO:0140096_0.531
|
IPR000719+4-299+|IPR001245+5-292_95-108_148-166_200-210_219-241_264-286+|IPR008266+154-166+|IPR011009+2-301+|IPR050940+3-293+
|
— |
PF07714+5-292+Protein_tyrosine_and_serine/threonine_kinase
|
— |
PTHR46485+3-293+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
339-339
|
1.000
|
1-338
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.691
|
37460.990
|
4.714
|
-11.000
|
25.664
|
10.029
|
42.773
|
57.227
|
11.799
|
13.864
|
53.097
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
turquoise
|
174.506
|
210.446
|
123.274
|
133.744
|
218.417
|
408.470
|
355.265
|
286.834
|
18.332
|
98.547
|
64.170
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.002
|
-0.791
|
— |
0.676
|
0.918
|
— |
-0.623
|
— | — | — | — | — | — |
No JSON data available for plots.