Hg_chrom1_TN10mRNA_2246
Organism: Heterodera glycines Gene Locus: chr1:18510104-18511301 Feature type: polypeptideProtein Sequence
Length: 201
(Signal peptide: 1-24)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.579 | 0.579 | 0.633 | 1.372 | 0.829 | 1.021 | 0.888 | 1.741 | 1.658 | 1.748 | 0.603 | 2.049 | 1.935 | 0.67 | 0.609 | 1.706 | 1.06 | 0.302 | 2.296 | 0.146 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2160
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-24
|
0.966
|
0.999
|
1.000
|
1.000
|
0.229
|
0.341
|
0.048
|
0.331
|
0.621
|
0.384
|
0.496
|
0.023
|
0.284
|
0.117
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000240
|
6.000
|
4.000
|
Hsc_gene_2144.t1;Hsc_gene_2148.t1;Hsc_gene_26134.t1;Hsc_gene_26137.t1
|
— | — | — |
AAP30770.1 putative gland protein G17G01 [Heterodera glycines]
|
NLA36656
|
0.340
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-201
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.705
|
22403.940
|
6.585
|
0.500
|
18.905
|
13.930
|
43.781
|
56.219
|
10.448
|
8.458
|
46.269
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
405.914
|
14.432
|
31.894
|
41.546
|
115.297
|
627.798
|
113.767
|
872.913
|
0.000
|
1094.254
|
625.288
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.913
|
1.391
|
0.491
|
1.442
|
2.459
|
-2.455
|
— |
-2.795
|
-10.888
|
6.234
|
— | — | — |