Hg_chrom1_TN10mRNA_2248
Organism: Heterodera glycines Gene Locus: chr1:18541524-18544728 Feature type: polypeptideProtein Sequence
Length: 305
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.877 | 0.839 | 0.477 | 0.678 | 0.601 | 0.925 | 0.546 | 1.148 | 1.384 | 1.285 | 0.745 | 1.736 | 2.095 | 1.513 | 1.071 | 0.89 | 1.075 | 0.845 | 1.009 | 1.832 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2162
|
— | — |
1.556
|
2.000
|
1.000
|
1.000
|
2.000
|
2.000
|
2.000
|
1.000
|
2.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
RQLKRKI
|
30-52
|
0.959
|
— | — | — | — |
0.000
|
— | — |
0.194
|
0.575
|
0.118
|
0.085
|
0.855
|
0.403
|
0.436
|
0.020
|
0.326
|
0.063
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0003143
|
2.000
|
1.000
|
Hsc_gene_26177.t1
|
Hsc_gene_26177.t1
|
— |
Q9N5Y2.1 Probable very-long-chain enoyl-CoA reductase art-1 [Caenorhabditis elegans]
|
KAI1719965.1 3-oxo-5-alpha-steroid 4-dehydrogenase domain-containing protein [Ditylenchus destructor]
|
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0006629|GO:0016627
|
GO:0005575_0.887|GO:0110165_0.887|GO:0016020_0.814|GO:0005622_0.777|GO:0005737_0.757|GO:0043226_0.735|GO:0043227_0.723|GO:0043229_0.718|GO:0043231_0.708|GO:0071944_0.679|GO:0005886_0.662|GO:0008150_0.624|GO:0005773_0.573|GO:0003674_0.572|GO:0009987_0.563|GO:0012505_0.560|GO:0005783_0.511
|
IPR000626+1-69+|IPR001104+154-304+|IPR029071+18-69+|IPR039357+21-302+|IPR049127+4-80+
|
— |
PF02544+154-304+3-oxo-5-alpha-steroid_4-dehydrogenase|PF21696+4-80+TECR,_ubiquitin-like_domain
|
— |
PTHR10556+21-302+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-305
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.812
|
34992.830
|
9.598
|
15.500
|
18.689
|
17.377
|
38.689
|
61.311
|
12.459
|
6.230
|
46.557
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
6184.130
|
1685.756
|
2022.615
|
9242.513
|
26960.247
|
6822.804
|
9091.031
|
1594.281
|
387.164
|
5232.977
|
3156.200
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
2.318
|
2.300
|
1.513
|
-1.968
|
0.423
|
-2.204
|
2.653
|
-3.864
|
4.757
|
2.668
|
— | — |
No JSON data available for plots.