SCN Proteipedia

Hg_chrom1_TN10mRNA_225

Organism: Heterodera glycines Gene Locus: chr1:1635831-1642003 Feature type: polypeptide

Protein Sequence

Length: 625

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.209	1.786	0.64	0.441	0.8	1.969	0.819	1.92	0.569	0.908	0.776	1.412	0.978	1.446	1.469	1.394	0.446	0.727	0.369	0.329	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_219	—	—	1.111	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	8-Eggs_J4_Males	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm	—	KRKR	—	—	24-46	0.945	—	—	0.000	—	—	0.417	0.203	0.018	0.591	0.091	0.116	0.091	0.127	0.358	0.054

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0005617	1.000	1.000	Hsc_gene_3919.t1	Hsc_gene_3919.t1	—	—	KAH7728996.1 Protein T01B6.1 [Aphelenchus avenae]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005509	GO:0008150_0.956\|GO:0005575_0.922\|GO:0110165_0.921\|GO:0009987_0.910\|GO:0065007_0.891\|GO:0050789_0.886\|GO:0005622_0.877\|GO:0032502_0.835\|GO:0048856_0.835\|GO:0071840_0.771\|GO:0016043_0.770\|GO:0048513_0.729\|GO:0051179_0.726\|GO:0009653_0.721\|GO:0050793_0.715\|GO:0005737_0.712\|GO:0051234_0.711\|GO:0009888_0.709\|GO:0006996_0.708\|GO:0051641_0.704\|GO:0060429_0.695\|GO:0007010_0.688\|GO:0051301_0.686\|GO:0051649_0.685\|GO:0009887_0.684\|GO:0002009_0.683\|GO:0007049_0.683\|GO:0022402_0.683\|GO:0048729_0.683\|GO:0000280_0.682\|GO:0048285_0.682\|GO:0022603_0.681\|GO:0000278_0.679\|GO:0007017_0.679\|GO:0140014_0.679\|GO:1903047_0.679\|GO:0007163_0.678\|GO:0000226_0.677\|GO:0051640_0.675\|GO:0051656_0.675\|GO:0000132_0.670\|GO:0001736_0.670\|GO:0001738_0.670\|GO:0007164_0.670\|GO:0030010_0.670\|GO:0040001_0.670\|GO:0051293_0.670\|GO:0051294_0.670\|GO:0051653_0.670\|GO:0071944_0.670\|GO:0090175_0.670\|GO:0098725_0.670\|GO:1902850_0.670\|GO:2000027_0.670\|GO:0099568_0.545\|GO:0005938_0.540\|GO:0045177_0.540\|GO:0045179_0.540\|GO:0099738_0.540	IPR002048+36-71+\|IPR026828+12-550+	—	—	—	PTHR14907+12-550+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-34;95-382;426-625	2.000	35-94;383-425	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.964	68409.460	10.497	37.000	24.480	8.960	52.320	47.680	16.160	8.320	54.560

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	purple	grey	454.542	638.715	139.775	130.829	335.693	980.641	306.082	903.294	72.670	645.981	400.276

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.422	-2.425	—	1.326	1.563	-1.671	—	-1.419	-3.261	—	—	—	—

No JSON data available for plots.

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