Hg_chrom1_TN10mRNA_2250
Organism: Heterodera glycines Gene Locus: chr1:18545471-18551070 Feature type: polypeptideProtein Sequence
Length: 496
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.219 | 0.891 | 0.99 | 0.278 | 0.874 | 1.551 | 0.984 | 1.21 | 1.165 | 1.417 | 0.855 | 0.593 | 1.12 | 1.047 | 1.234 | 0.778 | 0.595 | 1.161 | 0.62 | 0.593 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2163
|
— | — |
1.222
|
1.000
|
1.000
|
1.000
|
2.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
2-pJ2_J3_J4_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
mitochondrion
|
— | — |
3-43
|
0.990
|
— | — | — | — |
0.000
|
— | — |
0.189
|
0.721
|
0.030
|
0.232
|
0.120
|
0.079
|
0.056
|
0.600
|
0.083
|
0.028
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001755
|
2.000
|
2.000
|
Hsc_gene_26176.t1;Hsc_gene_26176.t2
|
Hsc_gene_26176.t1;Hsc_gene_26176.t2
|
— |
P51660.3 Peroxisomal multifunctional enzyme type 2 [Mus musculus]
|
KAH7722956.1 CBN-MAOC-1 protein [Aphelenchus avenae];KAH7722957.1 CBN-MAOC-1 protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.844|GO:0110165_0.831|GO:0008150_0.773|GO:0016020_0.740|GO:0009987_0.714|GO:0005622_0.705|GO:0005737_0.666|GO:0043226_0.643|GO:0043229_0.631|GO:0043227_0.596|GO:0043231_0.588|GO:0003674_0.555|GO:0008152_0.535|GO:0044237_0.513
|
IPR002539+216-320+|IPR003033+389-485+|IPR029069+62-206_230-341+|IPR036527+372-490_373-486+|IPR054357+69-194+
|
— |
PF01575+216-320+MaoC_like_domain|PF02036+389-485+SCP-2_sterol_transfer_family|PF22622+69-194+MFE-2_hydratase_2_N-terminal_domain
|
— |
PTHR13078+51-349+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-496
|
1s9c_L
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.777
|
54225.010
|
8.965
|
11.000
|
24.798
|
9.274
|
43.750
|
56.250
|
14.113
|
10.685
|
51.008
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
turquoise
|
2040.628
|
191.069
|
640.235
|
3473.515
|
6312.882
|
4616.547
|
3937.712
|
890.747
|
165.378
|
1280.197
|
802.417
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.515
|
4.047
|
2.549
|
0.830
|
-0.437
|
-0.220
|
-2.480
|
2.287
|
-3.075
|
4.576
|
3.037
|
— | — |
No JSON data available for plots.