Hg_chrom1_TN10mRNA_2251
Organism: Heterodera glycines Gene Locus: chr1:18552721-18561787 Feature type: polypeptideProtein Sequence
Length: 662
(Signal peptide: 1-34)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.861 | 0.984 | 0.714 | 0.677 | 0.906 | 1.82 | 0.539 | 1.737 | 0.94 | 1.123 | 0.412 | 1.777 | 1.343 | 0.93 | 1.603 | 1.446 | 1.09 | 0.824 | 0.93 | 0.8 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2164
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
3-Not_described
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— |
KRNETPKGWQRGQRRRRRR
|
— | — | — | — |
1-34
|
— |
0.629
|
— |
3.000
|
0.096
|
0.076
|
0.043
|
0.190
|
0.134
|
0.139
|
0.220
|
0.044
|
0.747
|
0.025
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006503
|
1.000
|
1.000
|
Hsc_gene_26175.t1
|
Hsc_gene_26175.t1
|
— |
G5ECJ0.1 Gamma-aminobutyric acid receptor exp-1 [Caenorhabditis elegans]
|
KAI1719977.1 neurotransmitter-gated ion-channel ligand binding domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004888|GO:0005216|GO:0005230|GO:0006811|GO:0016020|GO:0034220
|
GO:0008150_0.973|GO:0009987_0.951|GO:0005575_0.916|GO:0110165_0.916|GO:0065007_0.872|GO:0050789_0.853|GO:0051179_0.851|GO:0006810_0.841|GO:0051234_0.841|GO:0003674_0.802|GO:0016020_0.789|GO:0071944_0.789|GO:0023052_0.781|GO:0005886_0.779|GO:0007154_0.776|GO:0006811_0.728|GO:0050794_0.713|GO:0055085_0.712|GO:0034220_0.692|GO:0030054_0.681|GO:0007267_0.661|GO:0050896_0.658|GO:0045202_0.636|GO:0005215_0.623|GO:0015267_0.623|GO:0022803_0.623|GO:0022857_0.623|GO:0032501_0.621|GO:0005216_0.620|GO:0015075_0.620|GO:0051716_0.617|GO:0099536_0.604|GO:0099537_0.604|GO:0007268_0.598|GO:0022836_0.598|GO:0098916_0.598|GO:0060089_0.595|GO:0038023_0.593|GO:0007165_0.567|GO:0022834_0.566|GO:0015276_0.562|GO:0065008_0.532|GO:0098590_0.521|GO:0005230_0.518
|
IPR006028+337-357_394-415+|IPR006029+341-434+|IPR006201+133-464_168-184_204-215_252-266_328-340+|IPR006202+132-332+|IPR018000+252-266+|IPR036719+335-499+|IPR036734+123-332_125-330+|IPR038050+331-467+
|
— |
PF02931+132-332+Neurotransmitter-gated_ion-channel_ligand_binding_domain|PF02932+341-434+Neurotransmitter-gated_ion-channel_transmembrane_region
|
G3DSA:1.20.58.390:FF:000076+332-436+Glutamate-gated_chloride_channel,_putative|G3DSA:2.70.170.10:FF:000045+141-331+Predicted_protein
|
PTHR18945+133-464+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
39-117;453-619
|
3.000
|
1-38;118-452;620-662
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.806
|
75105.860
|
8.530
|
19.500
|
23.414
|
12.236
|
51.511
|
48.489
|
14.048
|
9.366
|
49.094
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
blue
|
610.001
|
75.754
|
352.025
|
117.239
|
62.447
|
82.444
|
109.057
|
145.057
|
418.918
|
2000.556
|
1322.711
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.987
|
0.493
|
-1.477
|
-0.939
|
— | — |
0.715
|
— | — | — |
-4.429
|
— | — |