Hg_chrom1_TN10mRNA_2252
Organism: Heterodera glycines Gene Locus: chr1:18563437-18564482 Feature type: polypeptideProtein Sequence
Length: 86
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.541 | 0.811 | 1.057 | 1.203 | 0.388 | 0.298 | 0.831 | 1.744 | 1.292 | 2.357 | 0.881 | 3.42 | 1.938 | 1.118 | 0.949 | 0.664 | 0.953 | 0.176 | 0.894 | 1.026 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2165
|
— | — |
1.111
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — |
17G01|AF5000311#op50jg5957t1
|
— | — | — |
6-Not_Clustered
|
0.666
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
mitochondrion
|
— | — | — | — |
8-33
|
0.948
|
— | — |
0.000
|
— | — |
0.385
|
0.693
|
0.113
|
0.382
|
0.523
|
0.200
|
0.181
|
0.149
|
0.104
|
0.107
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000520
|
4.000
|
3.000
|
Hsc_gene_26114.t1;Hsc_gene_26162.t1;Hsc_gene_3481.t1
|
— | — | — |
AAP30770.1 putative gland protein G17G01 [Heterodera glycines]
|
MDC3106027
|
0.540
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-86
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.789
|
9851.720
|
8.282
|
3.500
|
22.093
|
15.116
|
37.209
|
62.791
|
13.953
|
8.140
|
41.860
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
cyan
|
34.503
|
3.741
|
46.749
|
34.349
|
88.344
|
60.840
|
21.195
|
99.572
|
0.000
|
17.904
|
10.231
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.409
|
3.060
|
— |
1.333
|
-0.525
|
-1.510
|
0.605
|
-2.087
|
— |
5.959
|
— | — | — |
No JSON data available for plots.