Hg_chrom1_TN10mRNA_2255
Organism: Heterodera glycines Gene Locus: chr1:18568590-18575214 Feature type: polypeptideProtein Sequence
Length: 689
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.692 | 1.148 | 1.451 | 0.951 | 0.75 | 1.042 | 0.708 | 1.451 | 1.064 | 1.236 | 0.594 | 1.025 | 1.29 | 1.033 | 1.037 | 1.7 | 1.047 | 0.726 | 1.005 | 0.555 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2168
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.908
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— |
KTEEG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.412
|
0.385
|
0.066
|
0.613
|
0.285
|
0.348
|
0.262
|
0.147
|
0.160
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001756
|
1.000
|
3.000
|
Hsc_gene_16291.t1;Hsc_gene_16291.t2;Hsc_gene_26157.t1
|
Hsc_gene_26157.t1
|
— |
K8ESC5.1 Cysteine protease atg-4.1 [Caenorhabditis elegans]
|
KAI1700664.1 peptidase family c54 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0008234|GO:0019786
|
GO:0008150_0.848|GO:0009987_0.675|GO:0003674_0.673|GO:0008152_0.624|GO:0005575_0.593|GO:0043170_0.590|GO:0044238_0.585|GO:0110165_0.585|GO:0019538_0.533|GO:0003824_0.513|GO:0140096_0.506|GO:0005622_0.502
|
IPR005078+579-654+|IPR038765+35-313_587-653+|IPR046792+51-310_580-629+
|
— |
PF03416+51-310_580-629+Peptidase_family_C54
|
— |
PTHR22624+579-654+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
406-583
|
2.000
|
1-405;584-689
|
2p82_D
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.671
|
76098.940
|
5.197
|
-14.000
|
24.383
|
10.740
|
51.669
|
48.331
|
11.901
|
12.482
|
56.023
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
1146.802
|
1458.065
|
1088.173
|
853.023
|
876.366
|
940.995
|
1225.631
|
1208.826
|
478.323
|
1789.363
|
1227.489
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.652
|
-0.911
|
-0.242
|
— | — |
0.391
|
0.257
|
0.162
|
— | — | — | — | — |
No JSON data available for plots.