Hg_chrom1_TN10mRNA_2267
Organism: Heterodera glycines Gene Locus: chr1:18618159-18619441 Feature type: polypeptideProtein Sequence
Length: 240
(Signal peptide: 1-34)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.63 | 0.581 | 0.606 | 1.149 | 0.486 | 1.068 | 0.794 | 1.667 | 1.944 | 1.745 | 0.947 | 2.451 | 1.852 | 0.561 | 0.935 | 1.429 | 0.82 | 0.568 | 1.923 | 0.245 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2180
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
endoplasmic_reticulum
|
— |
KKKK
|
— | — | — | — |
1-34
|
— |
0.939
|
— |
0.000
|
0.394
|
0.214
|
0.018
|
0.173
|
0.479
|
0.237
|
0.158
|
0.017
|
0.134
|
0.059
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000240
|
6.000
|
4.000
|
Hsc_gene_2144.t1;Hsc_gene_2148.t1;Hsc_gene_26134.t1;Hsc_gene_26137.t1
|
— | — | — |
AAP30770.1 putative gland protein G17G01 [Heterodera glycines]
|
KAJ0667101
|
0.360
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-240
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.773
|
27078.050
|
9.868
|
15.000
|
20.417
|
13.333
|
42.083
|
57.917
|
14.167
|
6.250
|
42.917
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
388.839
|
2.201
|
4.238
|
8.211
|
33.229
|
859.268
|
30.045
|
1477.796
|
0.000
|
795.549
|
454.599
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.757
|
1.060
|
1.986
|
4.704
|
-4.827
|
0.669
|
-5.472
|
-10.440
|
— | — | — | — |