SCN Proteipedia

Hg_chrom1_TN10mRNA_2270

Organism: Heterodera glycines Gene Locus: chr1:18623683-18654167 Feature type: polypeptide

Protein Sequence

Length: 2,175

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	1.347	0.834	0.652	0.476	0.521	4.15	0.805	2.368	0.45	0.553	0.502	1.974	0.715	1.291	0.535	1.57	1.078	0.759	0.071	0.5	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_2183	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	28-Egg	0.998

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal	nucleus	—	RSLKRHR,SGKKKGKNKK,RKPYSCRKNVKRHRM,KKQQQQIGKCQPPKRKSG	—	—	—	—	—	—	0.000	—	—	0.858	0.066	0.008	0.416	0.037	0.018	0.025	0.005	0.080	0.021

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0006507	1.000	1.000	Hsc_gene_26128.t1	Hsc_gene_26127.t1	—	—	KAI1727635.1 zinc finger protein [Ditylenchus destructor]	No	-0.020

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.971\|GO:0050789_0.955\|GO:0065007_0.955\|GO:0009987_0.953\|GO:0050794_0.953\|GO:0005575_0.923\|GO:0008152_0.913\|GO:0019222_0.913\|GO:0031323_0.913\|GO:0044237_0.913\|GO:0110165_0.911\|GO:0032502_0.904\|GO:0043170_0.901\|GO:0060255_0.901\|GO:0003674_0.898\|GO:0005488_0.898\|GO:0009058_0.892\|GO:0009059_0.892\|GO:0009889_0.892\|GO:0010467_0.892\|GO:0010468_0.892\|GO:0010556_0.892\|GO:0031326_0.892\|GO:0044249_0.892\|GO:0032501_0.889\|GO:0005622_0.864\|GO:0003676_0.846\|GO:0097159_0.846\|GO:0048519_0.845\|GO:0050896_0.843\|GO:0048523_0.829\|GO:0016020_0.825\|GO:0043226_0.822\|GO:0043229_0.820\|GO:0005634_0.819\|GO:0043227_0.819\|GO:0043231_0.819\|GO:0016043_0.817\|GO:0071840_0.817\|GO:0050793_0.782\|GO:0009892_0.776\|GO:0031324_0.769\|GO:0010605_0.767\|GO:0009890_0.761\|GO:0031327_0.761\|GO:0010558_0.760\|GO:0006950_0.731\|GO:0009628_0.708\|GO:0010629_0.699\|GO:0006325_0.692\|GO:0006338_0.692\|GO:0005737_0.689\|GO:0040029_0.689\|GO:0003723_0.684\|GO:0009266_0.674\|GO:0007549_0.670\|GO:0008340_0.670\|GO:0009408_0.670\|GO:0040034_0.670\|GO:0003727_0.655\|GO:0003725_0.650	IPR013087+412-432_1161-1184_1163-1184_2087-2107+	SM00355+412-432_1161-1184_2087-2107+	—	—	—

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-303;475-834;899-2175	2.000	304-474;835-898	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.819	232959.590	7.157	34.500	17.379	9.103	54.713	45.287	10.667	6.713	56.184

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	black	greenyellow	4518.776	20603.957	4306.943	2059.312	1350.467	2473.609	1563.601	2156.274	4091.668	3758.084	3901.048

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-2.488	-3.460	-0.956	-0.640	0.888	-0.652	—	—	—	—	—	—	—

No JSON data available for plots.

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