Hg_chrom1_TN10mRNA_2273
Organism: Heterodera glycines Gene Locus: chr1:18689910-18692960 Feature type: polypeptideProtein Sequence
Length: 365
(Signal peptide: 1-28)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.51 | 0.765 | 1.395 | 0.567 | 1.507 | 1.264 | 1.109 | 2.055 | 1.035 | 0.889 | 0.996 | 1.612 | 1.598 | 0.738 | 1.51 | 0.431 | 0.629 | 1.162 | 0.632 | 0.806 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2186
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_26123
|
— |
20-Egg_ppJ2_pJ2_J3_J4
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
KRDASQDEIKSAYRKMAR
|
— | — | — | — |
1-28
|
0.784
|
0.668
|
0.000
|
0.000
|
0.616
|
0.181
|
0.032
|
0.451
|
0.502
|
0.216
|
0.158
|
0.015
|
0.141
|
0.285
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006510
|
1.000
|
1.000
|
Hsc_gene_26123.t1
|
Hsc_gene_26123.t1
|
— |
Q8MPX3.2 DnaJ homolog dnj-20 [Caenorhabditis elegans]
|
KAI1719951.1 dnaJ domain-containing protein [Ditylenchus destructor]
|
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0006457|GO:0051082
|
GO:0005575_0.801|GO:0110165_0.798|GO:0008150_0.770|GO:0003674_0.686|GO:0005622_0.667|GO:0009987_0.644|GO:0005737_0.615|GO:0005488_0.604|GO:0016020_0.595|GO:0043226_0.528|GO:0065007_0.517
|
IPR001623+30-88_31-85_31-93_31-96_33-51_51-66_68-88_88-107+|IPR002939+141-333+|IPR008971+135-257_257-344+|IPR036869+27-126_29-130+|IPR051736+18-363+
|
SM00271+30-88+
|
PF00226+31-93+DnaJ_domain|PF01556+141-333+DnaJ_C_terminal_domain
|
G3DSA:2.60.260.20:FF:000013+253-352+DnaJ_subfamily_B_member_11
|
PTHR44298+18-363+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-365
|
2ctw_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.599
|
41964.370
|
6.236
|
-2.500
|
34.795
|
13.425
|
49.863
|
50.137
|
18.082
|
16.712
|
44.658
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
tan
|
2616.148
|
2277.432
|
2110.462
|
1849.488
|
1631.337
|
1428.710
|
1206.239
|
1241.337
|
9027.683
|
270.510
|
4023.584
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.338
|
-0.438
|
— |
-0.213
|
— |
-0.234
|
— | — |
4.933
|
-2.101
|
— | — | — |