Hg_chrom1_TN10mRNA_2274
Organism: Heterodera glycines Gene Locus: chr1:18698434-18702416 Feature type: polypeptideProtein Sequence
Length: 642
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.598 | 1.195 | 1.105 | 0.537 | 1.298 | 0.759 | 0.686 | 1.012 | 0.969 | 1.074 | 1.322 | 1.741 | 1.644 | 0.899 | 0.954 | 0.868 | 0.894 | 0.92 | 1.917 | 1.237 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2187
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-29
|
0.991
|
1.000
|
0.000
|
0.000
|
0.321
|
0.410
|
0.081
|
0.439
|
0.252
|
0.255
|
0.122
|
0.073
|
0.341
|
0.553
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000523
|
3.000
|
4.000
|
Hsc_gene_145.t1;Hsc_gene_19275.t1;Hsc_gene_22433.t1;Hsc_gene_26122.t1
|
Hsc_gene_26121.t1;Hsc_gene_26122.t1
|
— |
P19813.1 Trehalase [Oryctolagus cuniculus]
|
KAI3420251.1 Trehalase [Globodera pallida]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004555|GO:0005975|GO:0005991
|
GO:0008150_0.853|GO:0005575_0.790|GO:0003674_0.787|GO:0110165_0.787|GO:0008152_0.707|GO:0003824_0.704|GO:0044238_0.624|GO:0016787_0.622|GO:0009056_0.613|GO:0016020_0.604|GO:0016798_0.568|GO:0004553_0.567|GO:0015927_0.562|GO:0005975_0.537|GO:0071944_0.531|GO:0005984_0.526|GO:0005991_0.526|GO:0005993_0.526|GO:0009311_0.526|GO:0009313_0.526|GO:0016052_0.526|GO:0046352_0.526|GO:0005886_0.519
|
IPR001661+63-623_95-616_261-279_329-346_364-381_519-535_599-612+|IPR008928+75-619+|IPR012341+72-636+|IPR018232+219-232+
|
— |
PF01204+95-616+Trehalase
|
— |
PTHR23403+63-623+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-642
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.646
|
74420.800
|
6.948
|
3.500
|
29.283
|
14.642
|
48.910
|
51.090
|
15.421
|
13.863
|
45.950
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
5911.148
|
98.433
|
56.675
|
76.337
|
68.368
|
3328.206
|
342.848
|
63548.848
|
267.659
|
340.635
|
309.359
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.025
|
-0.504
|
0.538
|
— |
5.620
|
-3.264
|
4.158
|
-7.390
|
— | — | — | — | — |