SCN Proteipedia

Hg_chrom1_TN10mRNA_2278

Organism: Heterodera glycines Gene Locus: chr1:18708062-18717672 Feature type: polypeptide

Protein Sequence

Length: 529

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.901	0.659	1.272	0.391	0.851	0.727	1.215	1.229	0.798	1.533	0.659	1.446	1.365	0.836	1.35	1.242	0.93	0.917	0.436	0.612	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom1_TN10gene_2190	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	11-Not_described	0.995

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_localization_signal\|nuclear_export_signal	cytoplasm\|nucleus	—	RKNCGTDNGQLYAMKVLKK	—	—	—	—	—	—	0.000	—	—	0.582	0.216	0.018	0.714	0.078	0.234	0.181	0.057	0.344	0.038

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0001758	1.000	3.000	Hsc_gene_26117.t1;Hsc_gene_26117.t2;Hsc_gene_26117.t3	Hsc_gene_26117.t1	—	Q15418.2 Ribosomal protein S6 kinase alpha-1 [Homo sapiens]	KAI3411759.1 Ribosomal protein S6 kinase alpha-1 [Globodera pallida]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004672\|GO:0004674\|GO:0005524\|GO:0006468	GO:0008150_0.957\|GO:0009987_0.921\|GO:0065007_0.889\|GO:0050789_0.885\|GO:0050794_0.869\|GO:0005575_0.838\|GO:0110165_0.830\|GO:0003674_0.824\|GO:0003824_0.824\|GO:0016740_0.824\|GO:0050896_0.799\|GO:0016772_0.796\|GO:0016301_0.792\|GO:0005622_0.769\|GO:0051716_0.762\|GO:0140096_0.761\|GO:0004672_0.743\|GO:0016773_0.743\|GO:0007154_0.737\|GO:0023052_0.731\|GO:0007165_0.726\|GO:0004674_0.611\|GO:0048518_0.608\|GO:0008152_0.572\|GO:0048522_0.568\|GO:0016020_0.551\|GO:0044237_0.543\|GO:0043170_0.541\|GO:0044238_0.539\|GO:0005737_0.534\|GO:0032502_0.529\|GO:0019538_0.525\|GO:0036211_0.513\|GO:0043412_0.513\|GO:0032501_0.505	IPR000719+124-384_126-383+\|IPR000961+385-466_385-474+\|IPR008271+245-257+\|IPR011009+122-412+\|IPR017441+130-156+\|IPR017892+433-464+	SM00133+385-466+\|SM00220+124-384+	PF00069+126-383+Protein_kinase_domain\|PF00433+433-464+Protein_kinase_C_terminal_domain	G3DSA:1.10.510.10:FF:000010+206-403+Ribosomal_protein_S6_kinase\|G3DSA:3.30.200.20:FF:000013+123-224+Ribosomal_protein_S6_kinase	PTHR24351+90-472+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-25;62-111;497-529	2.000	26-61;112-496	3g51_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.748	57477.140	6.566	0.500	25.520	10.019	45.558	54.442	13.422	12.098	53.686

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	831.756	1243.027	931.914	805.928	1103.058	1209.129	2145.166	600.426	190.584	481.503	356.823

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.647	-0.762	—	0.422	—	0.837	-1.120	1.981	—	—	—	—	—

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