Hg_chrom1_TN10mRNA_2279
Organism: Heterodera glycines Gene Locus: chr1:18722383-18723336 Feature type: polypeptideProtein Sequence
Length: 101
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.382 | 0.691 | 0.9 | 0.341 | 0.825 | 1.269 | 0.589 | 0.99 | 1.32 | 1.07 | 0.9 | 1.747 | 0.275 | 0.0 | 3.839 | 0.566 | 0.974 | 0.9 | 0.0 | 1.165 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2191
|
— | — |
1.222
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
4.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
RRGRGERRTRVLLRDSAKKITK
|
26-46
|
0.997
|
— | — | — | — |
0.000
|
— | — |
0.854
|
0.174
|
0.181
|
0.394
|
0.022
|
0.009
|
0.032
|
0.000
|
0.123
|
0.044
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001754
|
3.000
|
1.000
|
Hsc_gene_16288.t1
|
Hsc_gene_16288.t1;Hsc_gene_26113.t1;Hsc_gene_26115.t1;Hsc_gene_26135.t1;Hsc_gene_26167.t1
|
— |
Q8NIG3.3 Histone H4 [Nakaseomyces glabratus CBS 138]
|
AAL78218.1 histone Hgg-28, partial [Heterodera glycines]
|
KAG9390031
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0030527|GO:0046982
|
GO:0005575_0.836|GO:0110165_0.829|GO:0005622_0.705|GO:0043226_0.687|GO:0043229_0.674|GO:0016020_0.667|GO:0043227_0.596|GO:0043231_0.589|GO:0005634_0.519
|
IPR001951+18-37_22-88_38-58_60-74_75-87_87-98+|IPR009072+3-101_8-100+|IPR035425+34-95+
|
SM00417+22-88+
|
PF15511+34-95+Centromere_kinetochore_component_CENP-T_histone_fold
|
— |
PTHR10484+9-100+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-21
|
1.000
|
22-101
|
7wlr_F
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.978
|
11801.660
|
11.861
|
16.000
|
36.634
|
6.931
|
54.455
|
45.545
|
26.733
|
9.901
|
41.584
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
black
|
201.246
|
0.845
|
2.071
|
11.609
|
19.929
|
667.967
|
14.698
|
870.800
|
0.000
|
284.983
|
162.848
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
3.651
|
2.601
|
— |
5.078
|
-5.498
|
— |
-5.744
|
-6.621
|
4.394
|
— | — |
5.899
|
No JSON data available for plots.