Hg_chrom1_TN10mRNA_2282
Organism: Heterodera glycines Gene Locus: chr1:18727978-18750002 Feature type: polypeptideProtein Sequence
Length: 2,294
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.014 | 1.227 | 1.324 | 0.737 | 1.795 | 2.336 | 0.628 | 1.351 | 0.852 | 1.272 | 0.845 | 1.128 | 0.448 | 0.562 | 1.192 | 0.897 | 0.822 | 0.68 | 0.671 | 0.282 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom1_TN10gene_2193
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.983
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
QKRKK,KRLQELDAPPRERKD,KREIAKQNNDEKLRAK,KKFNNNEKIQCIKEKGK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.260
|
0.141
|
0.013
|
0.450
|
0.181
|
0.140
|
0.176
|
0.026
|
0.392
|
0.274
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0006511
|
2.000
|
0.000
|
0.000
|
Hsc_gene_26107.t1;Hsc_gene_26111.t1
|
— | — |
KAH7727345.1 Protein T28C6.7 a [Aphelenchus avenae]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
PTHR45615+551-1263+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
140-381;595-686;839-895;1285-1341;1397-1468;1534-2001
|
7.000
|
1-139;382-594;687-838;896-1284;1342-1396;1469-1533;2002-2294
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.821
|
257542.640
|
4.578
|
-121.000
|
32.171
|
6.146
|
57.847
|
42.153
|
14.124
|
18.047
|
47.384
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
4878.098
|
2509.416
|
3038.008
|
2943.380
|
3967.854
|
6140.959
|
3626.805
|
4832.197
|
9122.420
|
4352.882
|
6396.970
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.093
|
— |
0.399
|
0.645
|
-0.749
|
-0.452
|
-0.270
|
— |
-1.458
|
— | — | — |
No JSON data available for plots.